Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq84 129 5e-25 seq53 116 3e-21 >seq84 Length=1068272 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || || || || || || || || |||||||||| || || | | |||| ||| Sbjct 721336 ACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTACGGCCATCTTCC 721277 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || ||||| || || || || | ||||| || || || ||||||||||| ||||||||| Sbjct 721276 AACTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGA 721217 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || || | || | |||||||| | || || ||||| |||| || ||| Sbjct 721216 ATCTTCTGCTTGACGTTATCGATCGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTG 721157 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || || || || |||||||| Sbjct 721156 CCGGTCAAGGTCTTGACGAAAATCTGCAT 721128 Score = 125 bits (138), Expect = 6e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || |||||||||||||| || || || || || || || | || ||| | | | Sbjct 720887 ACGCAAGACCAAATGAAGGGTAGACTCCTTCTGGATGTTATAGTCAGAGAGAGTACGGCC 720828 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | |||||||| ||||| || | |||||| || || || ||||| || || || Sbjct 720827 ATCCTCAAGCTGCTTACCGGCAAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTT 720768 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| || || || || || | || | ||||| || | || || ||||| |||| Sbjct 720767 GTCTTGGATCTTCTGCTTGACGTTGTCAATGGTGTCGGAGGACTCGACCTCAAGGGTGAT 720708 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || |||||||| | ||| || || || ||||||||| Sbjct 720707 GGTCTTGCCGGTGAGAGTCTTAACGAAGATCTGCATG 720671 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 || || || ||||||||||| || || || || || || || || | | || | | || Sbjct 721570 CGCAATACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCAGAAAGGGTACGGCCA 721511 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || || | ||||| || ||||| || | ||||| || || || ||||| || || ||| Sbjct 721510 TCCTCAAGCTGCTTGCCAGCAAAAATGAGGCGCTGCTGGTCTGGGGGAATACCCTCCTTA 721451 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 ||||| || || || || ||| | || | || ||||| | ||| || ||||| |||| Sbjct 721450 TCTTGGATCTTCTGCTTGACATTGTCAATGGTATCAGAGGATTCGACCTCAAGGGTGATG 721391 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || |||||||| || || || || || |||||||| Sbjct 721390 GTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 721356 >seq53 Length=681236 Score = 116 bits (128), Expect = 3e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||||||||| || ||||| |||||||| || | || || | |||| || Sbjct 252374 ACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTACGACCATCTTCA 252433 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | || || || || || || | ||||| || || || ||||| ||||| || || ||| Sbjct 252434 AGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGA 252493 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || || | || | ||||| || | || ||||| | ||||| ||||| Sbjct 252494 ATCTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCAACTTCCAAAGTGATAGTTTTA 252553 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 ||||||||||| || || || |||||||| |||||||| Sbjct 252554 CCGGTTAAAGTCTTGACGAAAATCTGCATACCGCCGCGAAGA 252595 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||||||||| || ||||| |||||||| || | || || | |||| || Sbjct 252830 ACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTACGACCATCTTCA 252889 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | || || || || || || | ||||| || || || ||||| ||||| || || ||| Sbjct 252890 AGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGA 252949 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || || | || | ||||| || | || ||||| | ||||| ||||| Sbjct 252950 ATCTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCAACTTCCAAAGTGATAGTTTTA 253009 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||||||||| || || || |||||||| Sbjct 253010 CCGGTTAAAGTCTTGACGAAAATCTGCAT 253038 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||||||||| || ||||| |||||||| || | || || | |||| || Sbjct 252146 ACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTGCGACCATCCTCA 252205 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | || || || || || || | |||||| || || || ||||| ||||| || || ||| Sbjct 252206 AGCTGTTTTCCGGCGAAAATAAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGA 252265 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || || | || | ||||| || | || ||||| | ||||| || ||| Sbjct 252266 ATCTTCTGCTTGACGTTGTCGATGGTGTCGGAAGACTCAACTTCCAAAGTGATTGTCTTG 252325 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || || || |||||||| Sbjct 252326 CCAGTGAGTGTCTTGACGAAAATCTGCAT 252354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396277733509266