Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq47 185 2e-41 seq49 131 3e-25 seq57 104 4e-17 >seq47 Length=818200 Score = 185 bits (204), Expect = 2e-41 Identities = 786/1229 (64%), Gaps = 37/1229 (3%) Strand=Plus/Minus Query 212907 GGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAG 212966 || || || |||||||| || || | ||||| | | ||| | || || || ||| Sbjct 306053 GGATTCACAATCTGGAACTCTCCCGCAAGCACTCGACGTGTGTAGATATTAGAGGTATAG 305994 Query 212967 GGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCC 213026 ||||||| | || ||| ||||| ||||||| || || || ||||| || ||| Sbjct 305993 GGCTCGAAACATTCATTGAAACCCAGGATCTGTGAGGTCGAAGCCGTAGGCATCGGTGCC 305934 Query 213027 ACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCC 213086 |||| ||| ||| | |||||| |||| ||| | ||| ||| |||||||| Sbjct 305933 ACCAAGAGTGAGTTGCGCACTCCATGCTGCTTGATACTGGCCCGGAGCGTATCCCAGTCC 305874 Query 213087 CATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTG 213146 || || || | | | || ||||||||| |||||||| || || Sbjct 305873 CAG---------AGATCGGAGGGCGTTACCCCCCACATGTCCGGTTGCAAGATTCCCTTC 305823 Query 213147 CTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGAC 213206 ||||| ||||| || | || | || | ||||| |||| ||| ||||| Sbjct 305822 GAAACGGGTGAGCCCTCATAGGTCTCATAAGTACCCTCCTCCTGAGCCATCTCACAGGAT 305763 Query 213207 GCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCT 213266 | | || || || | |||||||| || || |||| | |||| | || ||||| Sbjct 305762 GATTCCAAAGCCGCATGATAGATGGTCTCGAAAATCTGCTTGTTCAACTGACGTGCCTCG 305703 Query 213267 GGGGACGTGAAGGGCATCATCATGCGTTG--GAACACATCAGCCAGCCCCTGGACCCCGA 213324 || || |||||||| ||| ||| ||| |||| || || |||||||| || | Sbjct 305702 GGTGAGTCAAAGGGCATGCGCATC--TTGATGAATGCATCCGCTAGACCCTGGACACCCA 305645 Query 213325 TGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACT-CCTCC---AAGGGGTAAAAG 213380 || | || | || | | ||| ||| || || |||| | || || || Sbjct 305644 CACCCACAGGACGATGACGCTTGTTGGACC----GCTCTGCCTCTGGAACAGGATAGTAG 305589 Query 213381 TTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTAC 213440 || || || |||||||| | ||||||||| | || |||||||| ||| || | Sbjct 305588 TTCTGATCAATAATCTTGTTCAAGTTGCGGGTCACGACCTTGGTGACCTGGTGAAGCATC 305529 Query 213441 TCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGG 213500 | ||| | |||| | | || ||| || ||||| || || ||||||| | Sbjct 305528 T--TGAAGTCATACGT---CTGATTATTGATAAAAGTC-GGCAGCGCAATACTGGCCAAG 305475 Query 213501 TTGCAAACGGCCACCTCCTGAGAGTCTG-TGTACTCCATGATCTCGGTGCACAGGTTGCT 213559 || || || || || || | | | ||| |||| || | ||||| || |||| || || Sbjct 305474 TTACAGACCGCTACTTCGTCTG-GACTGCTGTATTCAACAATCTCTGTACACAAATTACT 305416 Query 213560 GCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAG 213619 ||| ||| || || |||||||| || || || || |||| || ||||||||| || Sbjct 305415 GCACTTGATCGTTCCAAGGTTCTGTTGATTCGATTTACGGTTGCAAGCATCCTTGTAAAG 305356 Query 213620 CATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGC 213679 |||||| || | |||||||| ||||| | |||| || |||||| | | ||| Sbjct 305355 CATGTAAGGCGTACCGGTCTCGGTCTGGGCCTCCAGAATAGCATACCAGAGTTTCTGGGC 305296 Query 213680 CTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAA 213739 ||||| | | | || || | | ||| || | | ||||| || | ||| Sbjct 305295 CTTGATGGTCTTGCGGGCACGACC---CTCACGCTCATATCGATGATAGAGTTCCTCGAA 305239 Query 213740 TTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTC 213799 ||| | |||||| || | ||||| || || ||||| | || |||||||| Sbjct 305238 TTCTTCGCCCCACACATCTTGAAGTCCAGGTGCCTCCGCAGGACAGAACAGACTCCAGTC 305179 Query 213800 CCCGTCATCTCTGACTC-TCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGT 213858 ||| || || | ||| ||||||||| || |||| ||| || || ||||| | Sbjct 305178 AGCGTTTTCCTCGATACGTCT-CATGAACAGATCAGGGATCCAGAGAGCATAGAACAAAT 305120 Query 213859 CCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGT 213918 | | | | |||| ||| ||||| ||| ||||| ||||| || || ||||||| | Sbjct 305119 CACGAGCACGGGTCTCCTCCTTTCCAGTGTTCTTGCGAAGATCCAGGAATTCAAAGACAT 305060 Query 213919 CCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGT 213975 | || ||||| || || | || ||||||||||| || | || | ||||||||||| | Sbjct 305059 CGGCATGCCAGGGTTCGAGATACATGGCAAAGGCACCAGGACGCTTGTTGCCGCCCTGAT 305000 Query 213976 CCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTC 214035 | || | ||| ||||| ||| || || | || | || ||| ||||| | || Sbjct 304999 CAACATAACGAGCCGTATTGTTGTAGACACGAAGCATAGGAATCAACCCATTGGAATATC 304940 Query 214036 CGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGC 214095 |||| ||||| || || || || || || || | | |||| || || || |||| Sbjct 304939 CGTTCGTTCCAGCAATGTATGAACCCGACGCACGAATGTTGTGAATATTAAGACCAATGC 304880 Query 214096 CACCGGCGTACTTGGAGATCATGGCGCAG 214124 | || ||| || ||||||||||| ||| Sbjct 304879 CTCCAGCGGTTTTCGAGATCATGGCACAG 304851 >seq49 Length=746914 Score = 131 bits (144), Expect = 3e-25 Identities = 797/1250 (64%), Gaps = 64/1250 (5%) Strand=Plus/Minus Query 212906 AGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAA--GTTTGAAGTG 212963 |||||| || |||||||| ||||| | ||| || | ||| ||||| ||| ||||| Sbjct 374483 AGGGTTCACAATCTGGAATTCACCCGCGAGAACGCG--TCTTGTAAAGATGTTGGAAGTA 374426 Query 212964 TAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGA 213023 || ||||| | | || ||||| |||| ||||| | ||| ||||||||||||||| Sbjct 374425 TAAGGCTCAAAACATTCATTGTTACCCAAGATCTGGGATGTGGACGCTGTGGGCATGGGA 374366 Query 213024 GCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAG 213083 || || || | ||||| || || |||| ||| | ||||| ||||| Sbjct 374365 GCTACAAGCAACGAGTTCCGGACGCCATGCTTCGAAATGTTGTCACGAAGGGTGTCCCAG 374306 Query 213084 TCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCT 213143 ||||| ||| || || || ||||||||| |||| || || Sbjct 374305 TCCCAG-----AGATCAGTTGGAGTG----ACCCCCCACATGTCTGGTTGCAGAATACCC 374255 Query 213144 TTGCTCACGGGGCTGCCCTGGTAAGAGGA-GTAGGGGCCATGCTCCTTG-GCCAGCTCGC 213201 || ||| || |||||| || | |||| || | || |||| || ||||| | Sbjct 374254 TTAGACACTGGAGA-CCCTGGATAGGTCACGTAGACACCCT-CTTCTTGAGCAAGCTCAC 374197 Query 213202 AGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGG 213261 | || || | || ||||| | |||||||| ||||| ||| ||| | || || Sbjct 374196 AAGATGCTTCGAGTGCAGCATGATAGATGGTCTCAAAAATCAAGACGTTCAATTTGCGGG 374137 Query 213262 CCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACA--CATCAGCCAGCCCCTGGAC 213319 | || | || |||||||| ||| ||| || | | || || || |||||||| Sbjct 374136 CTTCAAGCGAGTCAAAGGGCATGTGCATT--TTGAAAAAGGCGTCTGCTAGGCCCTGGAC 374079 Query 213320 CCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAA 213379 || | || || || | || | ||| ||||| | ||| | |||||| | Sbjct 374078 TCCCAATCCAATTGGACGATGACGTTTGTTGGACTTTTCGGCCTCAGGAACTGGGTAATA 374019 Query 213380 GTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTA 213439 ||| | || || | ||| || ||||| || || | ||||| |||| | | || Sbjct 374018 GTTTCTATCAATAACCTTATTCAGGTTCCGAGTTACGACTTTAGTGATCTTGTGGAGCAT 373959 Query 213440 CTCGTGATTGAACAC--GTA-GCC-------CCCGTCCTGCACAAACTCAGGCAGGGCGA 213489 || | || || || | | ||| || ||| || ||||| ||| || || | Sbjct 373958 CTTGAAATCAAATACTGGAATGCCATTGTCACCAGTCATG-ACAAAGGTAGGAAGAGCAA 373900 Query 213490 TGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTG-TGTACTCCATGATCTCGGTG 213548 | ||||||| ||| || || || ||||| | || | ||| |||| || |||||||| || Sbjct 373899 TACTGGCCAAGTTACAGACAGCGACCTCATCAGGG-CTGCTGTATTCGATGATCTCTGTA 373841 Query 213549 CACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGA- 213607 || || || || || ||| || |||| |||||| || || ||||| ||| | ||| Sbjct 373840 CAGAGATTACTACACTTGATAGTCCCCAAGTTCTGTTGATTCGACTT-GCGGTTACAGGC 373782 Query 213608 ATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCA 213667 ||| || || ||||| ||||| | || |||||| || | | |||| || | ||| Sbjct 373781 ATCTTTATAAAGCATATAGGGCGTTCCAGTCTCTGTTTGAGCCTCCAGGATTGCGAACCA 373722 Query 213668 GAGGTACCTGGCCTTGACCACCCGCCTGAC-AGCTCCGGGCGT--AGCCTCGTACTGTTC 213724 || | | ||||||| | || || ||| ||| | | ||| ||||| | || Sbjct 373721 CAGCTTCTGAGCCTTGATA----GTCTTACGAGC-CCGTCCTTCCAGC-TCGTA--GGTC 373670 Query 213725 GTA--GAGCTCGTTGAATTCGTGGCCCCAGAC--CCTGTCCAGTCCCGGACAGGATGCGG 213780 || ||| | | || || | ||||||||| | ||| || || || || | Sbjct 373669 ATATAGAGTTTCTCAAACTCTTCGCCCCAGACATCTTGT--AGACCAGGCGCCTCAGCAG 373612 Query 213781 GACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCC 213840 |||| | ||| ||||| || || | | | | || | |||||||||||| |||| || Sbjct 373611 GACAAAAGAGACTCCAATCGCCATTCTGTTCAATTCGTTTCATGAACAGGTCAGGGATCC 373552 Query 213841 ACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGAT 213900 | || | ||||| ||| | | | |||| ||| || | || ||||| || | Sbjct 373551 AGAGTCCCAGGAACAAGTCTCGAGCACGAGTCTCTTCCTTGCCTGTATTCTTGCGAAGGT 373492 Query 213901 CTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCC 213960 | | ||| ||||| | |||||| ||||| || |||| || ||||||||||| || |||| Sbjct 373491 CCAAAAAATCAAACACGTCCGCATGCCAAGGTTCCAAATACATGGCAAAGGCTCCTGGCC 373432 Query 213961 TCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTA 214017 |||| || || || || || || || |||| || | | || | || | Sbjct 373431 GCTTGTTTCCACCTTGATCTACATATCTCGCGGTATTGTTAAATACCCTCAACATAGGGA 373372 Query 214018 CCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGC 214077 || ||||| || || || || || || || ||||| || || ||||| | || || Sbjct 373371 TCAATCCGTTAGAATGACCATTCGTACCAGCAATATATGAACCTGAGGCTC---GGATG- 373316 Query 214078 TCATGGA----GAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCA 214123 | ||||| || || || ||||| || ||||||||||||||| || Sbjct 373315 TTATGGACATTAAGGCCAATCCCACCAGCAGTCTTGGAGATCATGGCACA 373266 >seq57 Length=574579 Score = 104 bits (114), Expect = 4e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48130 GCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAG 48189 |||||| || || |||| | || || || || |||||| ||||||||||| || Sbjct 521079 GCAGGCGAAATCAGTGTGGAGACCCTCATCACGCGAGATGAGTTCGTTGGAGAAGGTCAG 521020 Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 ||||||||||| || | || ||||||||| || || | ||||| | |||||||||||| Sbjct 521019 ACCAGGCATGAGACCACGCTTTTTGAGCCAAAAGATGGAAGCGAATGCGCCAGAGAAGAA 520960 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA 48309 |||||| || || || || || ||| | | || | || | |||| || ||| || Sbjct 520959 GATGCCTTCAACAGCAGCAAAGGCGACCAAACGTTCAGCAAAGGTTGCGTCCTGGTCAGA 520900 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTT 48339 ||||| | |||||| | |||||||| Sbjct 520899 AATCCACTTCATGGCCCAGGCAGCCTTCTT 520870 Score = 93.3 bits (102), Expect = 8e-14 Identities = 174/255 (68%), Gaps = 3/255 (1%) Strand=Plus/Minus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 ||||||||| || || |||||||| || ||| ||||| || || ||| || || || Sbjct 520446 GTACATCTCTGAATGAACATTCTCAATCATGATTTGGAAGCCATAAAAGCATCTTGCTTC 520387 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 | | ||| || || | ||||| | |||| || |||||||| || || ||||| Sbjct 520386 AGGGATCTGGACCTCATTCGAGAAACGTTCCAAGAGGTTCTCATTCACAATACCATCGCT 520327 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603 ||||||||||||||| |||| ||| || ||| || || | | || | | || Sbjct 520326 AGCAGCAAAGAAGGCCAGGATGTGTGAAACGAAGAATCGTTCATCTTCTGTCAAACGGTT 520267 Query 48604 ---CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAG 48660 |||| | || | ||| ||| || || ||||| || ||||||||||||| || Sbjct 520266 TTCCCAGTCATGCATGTCCTTGGAAAGATCTACTTCCTCAGCAGTCCAGAAGGATGCTTC 520207 Query 48661 TGCTTTTTTGTACAT 48675 || || |||||||| Sbjct 520206 AGCCTTCTTGTACAT 520192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931531193105920