Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq47 143 3e-29 seq79 132 6e-26 seq57 113 5e-20 seq117 111 2e-19 seq1 100 3e-16 >seq47 Length=818200 Score = 143 bits (158), Expect = 3e-29 Identities = 920/1461 (63%), Gaps = 37/1461 (3%) Strand=Plus/Plus Query 75145 TTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGGCATCCTCAT 75204 ||||||||| |||||||||||||| || |||| ||| || |||||| | Sbjct 304572 TTACTTTGGATTCAAAACCCTTGAGCGCTCTTACCTTCTCCGGATCAATGGCAAGGTTGC 304631 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 ||| | || ||| | ||||| ||||| ||| | |||| ||||| || || | | || Sbjct 304632 GGAGAGACCTCAGCATATGTTGATGCGTGTCTCGGTCGGGATCCATGGAGATAATGTGGA 304691 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAAC 75324 | | ||||| ||| | | ||||| || |||| || || | || || Sbjct 304692 CAAGGCTATTGAGACCTACAATTACATGTCTGAAAAATACTTCACCCATGCTTCGCCCAC 304751 Query 75325 CCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAA 75384 |||||||||||||| ||||| | || |||||||| ||| ||| | | | | || Sbjct 304752 GCTCTTCAATGCTGGAACACCTCGCCCTCAGATGTCATCTTGTTTCTTGTTGACGATGAA 304811 Query 75385 GGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTG 75444 ||| || || ||| | |||||||||| || || | | ||||| ||||| || Sbjct 304812 GGATGATTCGATCGAGGGTATCTATGATACCCTCAAGACCTGTGCCATGATCTCGAAAAC 304871 Query 75445 GGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGG 75504 ||||| || ||||| | | || || | | | || || ||| || Sbjct 304872 CGCTGGAGGCATTGGTCTTAATATTCACAACATTCGTGCGTCGGGTTCATACATTGCTGG 304931 Query 75505 GACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 75564 || || || | || |||| | ||||| |||||||| || | ||| || || || Sbjct 304932 AACGAACGGATATTCCAATGGGTTGATTCCTATGCTTCGTGTCTACAACAATACGGCTCG 304991 Query 75565 CTATGTAAATCAAGCGGGGCGTC-GCAAG------GGGTCCATCGCGGTCTACTTGGAAC 75617 ||||| |||| ||||| | |||| || || | || | || | |||| Sbjct 304992 TTATGTTGATCA----GGGCGGCAACAAGCGTCCTGGTGCCTTTGCCATGTATCTCGAAC 305047 Query 75618 CATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGG 75677 | |||||||||||| || | || ||||| || | || ||| || | || ||| Sbjct 305048 CCTGGCATGCCGATGTCTTTGAATTCCTGGATCTTCGCAAGAACACTGGAAAGGAGGAGA 305107 Query 75678 CTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTG 75737 | || | | ||| | || | | || ||||| || || || ||||||| || | | Sbjct 305108 CCCGTGCTCGTGATTTGTTCTATGCTCTCTGGATCCCTGATCTGTTCATGAGACGTATCG 305167 Query 75738 AGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGG 75797 |||| | | | ||| ||| |||||||| | ||||||| || || || | | Sbjct 305168 AGGAAAACGCTGACTGGAGTCTGTTCTGTCCTGCGGAGGCACCTGGACTTCAAGATGTGT 305227 Query 75798 TGGGTGAGGAGTTTGAAGCCCTCTA-CACAAAGTATGAAGAGGAGGGTAGAGCCAATGCG 75856 ||| || || || || | ||||| || | ||||| |||||| | ||| | Sbjct 305228 GGGGCGAAGAATTCGAGGAACTCTATCATCGA-TATGAGCGTGAGGGTCGTGCCCGCAAG 305286 Query 75857 ACTGTACCAGCCGCCG-ATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAAC 75915 || | | || | | | | | ||| | |||||||| | | ||||| ||||| || || Sbjct 305287 ACCAT-CAAGGCCCAGAAACTCTGGTATGCTATTCTGGAGGCCCAGACCGAGACCGGTAC 305345 Query 75916 ACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAAC 75975 || || |||||||||||||||||||| ||| || || ||| |||| | ||||| Sbjct 305346 GCCTTACATGCTTTACAAGGATGCTTGCAACCGTAAATCGAATCAACAGAACCTTGGAAC 305405 Query 75976 AATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACA-CAGATAAGGATGAGACGG 76034 |||||| || ||| | || || || ||| | || |||| ||| | || || | Sbjct 305406 GATCAAGTGCAGTAATTTGTGTACAGAGATTGTTGAATACAGCAG-TCCAGACGAAGTAG 305464 Query 76035 CTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTT 76094 | || || || ||||| || || || || | | | ||||| | || || | Sbjct 305465 CGGTCTGTAACTTGGCCAGTATTGCGCTGCCGACTTTTATCAAT------AATCAGACGT 305518 Query 76095 TTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCA 76154 ||| | | | ||||| | |||| ||| | || ||| || | ||| | | Sbjct 305519 ATGACTTCAAGATGCTTCACCAGGTCACCAAGGTCGTGACCCGCAACTTGAACAAGATTA 305578 Query 76155 TTGA-CAGAAATTTTTATCCCGTT---GAGACTGCGCGAAAGTCTAATATGCGACACAGA 76210 |||| ||| || | ||||| ||| ||| | | ||| ||| || | ||| || | Sbjct 305579 TTGATCAG-AACTACTATCCTGTTCCAGAGGCAGAGCG---GTCCAACAAGCGTCATCGT 305634 Query 76211 CCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTT 76270 ||| | ||| ||||||| || ||||| ||||||| ||| || | ||| | ||| Sbjct 305635 CCTGTGGGTGTGGGTGTCCAGGGTCTAGCGGATGCATTCATCAAGATGCGCATGCCCTTT 305694 Query 76271 GATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCC 76330 || ||| || || || |||| | || || || ||||| ||||| || | Sbjct 305695 GACTCACCCGAGGCACGTCAGTTGAACAAGCAGATTTTCGAGACCATCTATCATGCGGCT 305754 Query 76331 CTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCT 76390 |||| | ||||| ||||| | | | ||| | |||||||| | |||||| || Sbjct 305755 TTGGAATCATCCTGTGAGATGGCTCAGGAGGAGGGTACTTATGAGACCTATGAGGGCTCA 305814 Query 76391 CCCGCGTCCCAAGGGGTGCTT-CAGTTTGATATGTGGGAAGGTGAAACC--AAGCTCAAC 76447 |||| | | ||||| ||| || || ||||||| ||| | || | || | Sbjct 305815 CCCG-TTTCGAAGGGAATCTTGCAACCGGACATGTGGG-GGGTAACGCCCTCCGATC-TC 305871 Query 76448 TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTG 76507 | ||||||||| ||| || | |||||| || | || | || ||| || ||| Sbjct 305872 TGGGACTGGGATACGCTCCGGGCCAGTATCAAGCAGCATGGAGTGCGCAACTCACTCTTG 305931 Query 76508 ATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 76567 ||||||| ||||| || || || ||| |||| ||| ||||| |||||||| || || Sbjct 305932 GTGGCACCGATGCCTACGGCTTCGACCTCACAGATCCTGGGTTTCAATGAATGTTTCGAG 305991 Query 76568 CCATACACAACAAACATCTAC 76588 || || || | || |||||| Sbjct 305992 CCCTATACCTCTAATATCTAC 306012 >seq79 Length=364526 Score = 132 bits (146), Expect = 6e-26 Identities = 322/479 (67%), Gaps = 28/479 (6%) Strand=Plus/Minus Query 177495 ACCCACTTCCTTTTCGGCCGCACCCTCCCATGTGATCTCCTTTCCAACCTCTTTGAAGCA 177554 ||| || |||| ||| || ||||||||||| ||| ||| |||| | |||||| | Sbjct 32838 ACCGACCTCCTCTTCAGCAGCACCCTCCCAGCGGATAGACTTGCCAATGGCCTTGAAGGA 32779 Query 177555 CATTTCAACAAACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGC 177614 | | |||||||||| | |||| ||| |||| || || || | ||| | || |||| Sbjct 32778 CTTCTCAACAAACTCGCGGACAGTGTGCATCTCTCCTGTGGCCAGGACAAAGTCCTCAGG 32719 Query 177615 -CTCTTCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGT 177673 |||| || | || ||||| |||||| | |||||||| || |||||||||||| | Sbjct 32718 ACTCTCCT-GCTGGAGCATTCTCCACATACCCTCAACATAATCGCGGGCATGACCCCAAT 32660 Query 177674 CTC---TGGCAGCGTTGAGGTTACCGAGTTCAAGGAACTCTCTCTCACCTTTCACAATTT 177730 | | ||||| | | ||| ||||| | |||| ||||| ||| | ||| || Sbjct 32659 CACGCTTGGCA---TCCAAGTTTCCGAGGTAAAGGCACTCT-----TGCTTGCCCAACTT 32608 Query 177731 GTTTGA--CGCCATC---AGTAATCTTCTTTGTGACAAAG--TCGGCACCTCGTCTCGGT 177783 | |||| || || | || ||||| ||||| ||| ||| || || | ||| Sbjct 32607 GATTGAAGCGACAGCGCAGGTGATCTTGCGGGTGACGAAGGTACGG--CCACGGCGGGGT 32550 Query 177784 GATTCGTGGTTGAAGAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTT 177843 || ||||||||||||||||| ||| ||| |||||||| |||| || ||||| Sbjct 32549 GACTCGTGGTTGAAGAGGATACCGTTGCAAGCATACATGTTGTAGGCCTCGCGGTA---G 32493 Query 177844 TTGAC---GAGCCAGTGAGCGGCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAG 177900 ||||| || ||||| ||| ||| |||| || |||||| || || || ||||| Sbjct 32492 TTGACAGTGATCCAGTAGGCGTACAACTTGGCAACACCATAGGGTGAGCGAGGATAGAAA 32433 Query 177901 GGTGTCTCCTCAGTTTGTGGAGTTTCTCGGACTTTACCAAACATCTCCGAAGTTGAGGC 177959 || || || | || ||| | || | |||| ||| ||| ||| || || || || Sbjct 32432 GGAGTGGTTTCGCTCTGGGGAATCTCCTGAACTTGACCGTACAACTCAGAGGTAGAAGC 32374 >seq57 Length=574579 Score = 113 bits (124), Expect = 5e-20 Identities = 331/500 (66%), Gaps = 30/500 (6%) Strand=Plus/Plus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGG-TTTGACACAAAGTCTCGCTCCTTCGCCGAGCG 65081 |||||||| ||||| ||||| ||| ||| || | | | | |||| || || || Sbjct 520870 AAGAAGGCTGCCTGGGCCATGAAGTGGATTTCTGACCAGGACGCAA-CCTTTGCTGAACG 520928 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTA 65141 | | || ||||| ||| || || ||||||||||| || ||||| | || | Sbjct 520929 TTTGGTCGCCTTTGCTGCTGTTGAAGGCATCTTCTTCTCTGGCGCATTCGCTTCCATCTT 520988 Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201 |||| | || ||||| ||||||||||| || || |||||| || ||||| || || || Sbjct 520989 TTGGCTCAAAAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAACTCATCTCGCG 521048 Query 65202 AGATGAGGGTCTCCACCAGGAGTTTGCC-----GTGGAGCTC-TTCAAGACTTTGCGTAA 65255 ||||||||||||||| || || ||| | | ||| || || | ||| Sbjct 521049 TGATGAGGGTCTCCACACTGATTTCGCCTGCTTATTGTTCTCATTGTTGAGATCTCGTCC 521108 Query 65256 TAGACCCACTACCGAAAC-TATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAG 65314 | |||| | |||| | || | || ||| | | |||||| |||| ||| || ||| Sbjct 521109 T-GACCAA------AAACGTGTCAATGCTATCATTACAGAGGCTGTTGTGATCGAACAAG 521161 Query 65315 GGTTCATCTTGGACGCACTCCCATGTAAT-CTCATCGGTATGAACTCTGAGAAGATGTCC 65373 |||| | || || ||||| ||| || | || |||||||| | || |||| Sbjct 521162 AGTTCTTGACCGATGCTCTCCC-TGTGATGTTGATTGGTATGAATGCCAAGTTGATGAAA 521220 Query 65374 GAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGT--GCCACCCA--- 65428 | |||||||||| |||| | ||||||||| | || | | | | ||||| Sbjct 521221 CAATACATTGAGTTTGTGGCCGATCGTCTCTT------GGTCGCGCTCGGAAACCCAAAA 521274 Query 65429 -TTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACC 65487 || || | ||||||| |||||||||||||| || ||| | || |||||| Sbjct 521275 CATTACAATGTTGAGAATCCTTTTGACTTTATGGACTTGATCTCTCTTCAGGGCAAGACC 521334 Query 65488 AACTTCTTTGAGAAGCGAGT 65507 ||||||||||||||||| || Sbjct 521335 AACTTCTTTGAGAAGCGTGT 521354 >seq117 Length=942176 Score = 111 bits (122), Expect = 2e-19 Identities = 278/418 (67%), Gaps = 16/418 (4%) Strand=Plus/Plus Query 177496 CCCACTTCCTTTTCGGCCGCACCCTCCCATGTGATCTCCTTTCCAACCTCTTTGAAGCAC 177555 || || |||| || || ||||| ||||| ||| || |||| | ||||| || Sbjct 192396 CCGACCTCCTCCTCCGCAGCACCTTCCCAGCGGATGGTCTCGCCAATGGCCTTGAATGAC 192455 Query 177556 ATTTCAACAAACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCC 177615 | |||||||||| | |||| ||| |||| ||||| || | ||| | || || ||| Sbjct 192456 TTCTCAACAAACTCACGGACAGTGTGCATCTCTCCCGTTGCCAGGACAAAGTCCTCGGCC 192515 Query 177616 TCTTCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCT 177675 | ||| ||||||||||| |||||| | || || || || ||||| |||||||| Sbjct 192516 TTTTCCTGTTGAAGCATCCTCCACATACCCTCGACGTAATCGCGAGCATGGCCCCAGTCA 192575 Query 177676 CTGGCAGCGTTGAGGTTACCGAGTTCAAGGAACTCTCTCTCACCTTTCACAATTTGTTTG 177735 | |||| | ||||||||| | ||| ||||| | | || | ||| ||| ||| Sbjct 192576 CGCTTCGCGTCCAAGTTACCGAGGTAGAGGCACTCT-TGT----TTGCCCAACTTGATTG 192630 Query 177736 A--CGCCATC---AGTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGT 177790 | || || | || ||||| || |||||| | ||| || | || || |||| Sbjct 192631 ATGCGACAGCGCAGGTGATCTTACGGGTCACAAAGGTGCGACCGCGGCGAGGAGACTCGT 192690 Query 177791 GGTTGAAGAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGAC-- 177848 ||||||| ||||| ||| ||| |||||||| |||| || ||||| ||||| Sbjct 192691 GGTTGAAAAGGATACCGTTGCAAGCATACATGTTGTAGGCCTCACGGTA---GTTGACTG 192747 Query 177849 -GAGCCAGTGAGCGGCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGT 177905 || ||||| || || |||| ||| ||||| || || || || ||||| || Sbjct 192748 TGATCCAGTAGGCATACATCTTGGCGACACCATAAGGAGAGCGAGGATAAAAGGGAGT 192805 >seq1 Length=1854208 Score = 100 bits (110), Expect = 3e-16 Identities = 218/322 (68%), Gaps = 16/322 (5%) Strand=Plus/Minus Query 175186 TTCAGTGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTT 175245 |||| ||||||| || || |||| || || | ||| || ||| |||| | ||| Sbjct 338663 TTCAAGGATGTTGCAGGTATGGACGAGGCTAAGGTTGAGATTATGGAGTTTGTAAAATTT 338604 Query 175246 CTCAAGCAACCCGAG------AGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGCGCC 175299 |||||| | || || ||| | || ||| |||||||||||| ||||| Sbjct 338603 CTCAAGAATCCTGAAGCCTACAGAAAATTGGGA------GCCAAGATCCCCAAGGGCGCT 338550 Query 175300 CTTCTC-GCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGA 175358 || | | ||| | || || || ||||||||||| | || || | || ||||| Sbjct 338549 ATTTTGAGTGGGCCA-CCTGGAACTGGAAAGACCCTATTGGCAAAGGCGACGGCAGGTGA 338491 Query 175359 ATCAAATGTCCCATTCATCCAGTG-CTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTG 175417 | || || || ||| | |||| ||||| || | |||||||||||||||||||||| Sbjct 338490 AGCAGGAGTACCCTTCTTG-AGTGTCTCTGGATCAGAATTTGTGGAGATGTTTGTTGGTG 338432 Query 175418 TGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTG 175477 |||| ||| | | ||||| ||| | |||| | |||| | || ||| |||||| Sbjct 338431 TGGGAGCCTCACGCGTTCGTGATTTGTTTGCGAGCGCCAAGAAGCATGCACCTTGTATTA 338372 Query 175478 TCTTCATTGATGAGATTGATGC 175499 |||| || ||||| |||||||| Sbjct 338371 TCTTTATAGATGAAATTGATGC 338350 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 75935 GATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTT 75994 |||||||||||| || |||||| ||||| ||||||| |||| | ||||||| | Sbjct 982749 GATGCTTGTAACGCCAAATCTAACCAGCAGAATCTGGGAACTATCATGTGCTCAAACTTG 982808 Query 75995 TGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCA 76054 |||||||||||| | ||||| || | ||||| ||||| || || |||||||| Sbjct 982809 TGCACGGAAATTATTGAGTATACTGCACCTGATGAAGTTGCTGTCTGTAACTTGGCATCG 982868 Query 76055 ATCGCCCTTCCAAAGTATGT 76074 |||||| | ||||||| ||| Sbjct 982869 ATCGCCTTGCCAAAGTTTGT 982888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596568570917440