Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq53 109 1e-18 seq84 98.7 2e-15 >seq53 Length=681236 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||||||||| || | | ||| | || || | ||| || |||||||| || | | Sbjct 253084 AATATTATAATCGGAAAGCGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATGAGACG 253143 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| ||||| || || || ||||| || || || ||||| | ||| ||||| ||||| Sbjct 253144 CTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATTTTCTGTTTAACATTGTCGATAGT 253203 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || || || ||||| || | ||||||||| || || || | ||| || | || ||||| Sbjct 253204 GTCGGAGGACTCTACCTCCAAAGTAATGGTCTTGCCGGTGAGTGTCTTGACAAAAATCTG 253263 Query 172067 CATTTTAT 172074 |||||||| Sbjct 253264 CATTTTAT 253271 >seq84 Length=1068272 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | ||| || ||||| ||||| | || | ||| || ||| ||||| || || Sbjct 721582 CCACCGCGAAGGCGCAATACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCAGAA 721523 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | | || | || || | || || ||||||||||| | | ||| ||||| || || Sbjct 721522 AGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAAATGAGGCGCTGCTGGTCTGGGGGA 721463 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || || || |||||||| || || | || ||||| || ||||| || ||||| || Sbjct 721462 ATACCCTCCTTATCTTGGATCTTCTGCTTGACATTGTCAATGGTATCAGAGGATTCGACC 721403 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||| || || || || || || | ||| |||||||| Sbjct 721402 TCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 721356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905134438640400