Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq47 215 2e-50 seq49 109 2e-18 seq60 104 7e-17 seq57 102 2e-16 seq1 100 8e-16 seq51 98.7 3e-15 seq84 93.3 1e-13 seq62 87.8 5e-12 >seq47 Length=818200 Score = 215 bits (238), Expect = 2e-50 Identities = 583/884 (66%), Gaps = 15/884 (2%) Strand=Plus/Minus Query 155627 GCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTG 155686 ||||||||| |||||||| |||| ||| | |||||| || || | |||| || Sbjct 305448 GCTGTATTCAACAATCTCTGTACACAAATTACTGCACTTGATCGTTCCAAGGTTCTGTTG 305389 Query 155687 GTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTG 155746 || ||||||| ||| |||||||||||||| || ||||| || || || ||||| |||| Sbjct 305388 ATTCGATTTACGGTTGCAAGCATCCTTGTAAAGCATGTAAGGCGTACCGGTCTCGGTCTG 305329 Query 155747 TGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTC 155806 || |||||||| |||||| | |||| || || |||| | | || || Sbjct 305328 GGCCTCCAGAATAGCATACCAGAGTTTCTGGGCCTTGATGGTCTTGCGGGCACGACCCTC 305269 Query 155807 CGACTCATATTTCATATACAGCGTTCG--GTAATCCTCACCGTAACAATCACTCAGTCCA 155864 ||||||| ||| || ||| | | || || || | ||| |||||| Sbjct 305268 ACGCTCATATCGATGATAGAG--TTCCTCGAATTCTTCGCCCCACACATCTTGAAGTCCA 305211 Query 155865 GGGCACTTATCGGGGCAAAACAGCGACCAA--ATTTTATTAC-CGATTACACGCTCCATA 155921 || || | || || ||||| ||| | | || | |||| ||| ||| Sbjct 305210 GGTGCCTCCGCAGGACAGAACAGACTCCAGTCAGCGTTTTCCTCGAT---ACGTCTCATG 305154 Query 155922 AATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC- 155980 || | |||| ||| | ||||||||| | || | || | |||||| | || Sbjct 305153 AACAGATCAGGGATCCAGAGAGCATAGAACAAATCACGAGCACGGGTCTCCTCCTTTCCA 305094 Query 155981 GTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACAT 156040 ||| ||||| || || || | |||||| | ||| | ||| || || |||||||| Sbjct 305093 GTG-TTCTTGCGAAGATCCAGGAATTCAAAGACATCGGCATGCCAGGGTTCGAGATACAT 305035 Query 156041 AGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAA 156097 ||||| |||| | |||| || |||||||| ||||| ||||| || || ||| | Sbjct 305034 GGCAAAGGCACCAGGACGCTTGTTGCCGCCCTGATCAACATAACGAGCCGTATTGTTGTA 304975 Query 156098 GACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACC 156157 ||||| ||||||||||| | ||||||||| || || ||||| ||| | ||||| Sbjct 304974 GACACGAAGCATAGGAATCAACCCATTGGAATATCCGTTCGTTCCAGCAATGTATGAACC 304915 Query 156158 AGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGC 156217 || | |||| || ||||||| || ||||| || || | ||| || || || Sbjct 304914 CGACGCACGAATGTTGTGAATATTAAGACCAATGCCTCCAGCGGTTTTCGAGATCATGGC 304855 Query 156218 GCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATA 156277 || ||| | |||| | ||||| || || |||||||| | ||| | | | | Sbjct 304854 ACAGGTCTTGAGGGTATCATAGATACCCTCGATCGAATCATCCTTCATCGTCAACAAGAA 304795 Query 156278 GCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAAT 156337 || || | ||||| || ||||||||||| ||||| || || || | ||||| | Sbjct 304794 ACAAGATGACATCTGAGGGCGAGGTGTTCCAGCATTGAAGAGCGTGGGCGAAGCATGGGT 304735 Query 156338 AAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTG 156397 || || || | |||||| |||| ||| ||||| || ||| || | |||| || || Sbjct 304734 GAAGTATTTTTCAGACATGTAATTGTAGGTCTCAATAGCCTTGTCCACATTATCTCCATG 304675 Query 156398 AATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAAT 156457 || | || ||||| | |||| ||||||||||||| | ||| ||| | |||| || Sbjct 304674 GATCCCGACCGAGACACGCATCAACATATGCTGAGGTCTCTCCGCAACCTTGCCATTGAT 304615 Query 156458 TCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAAT 156501 || |||||||| | ||| || || ||||| || || || |||| Sbjct 304614 CCGGAGAAGGTAAGAGCGCTCAAGGGTTTTGAATCCAAAGTAAT 304571 >seq49 Length=746914 Score = 109 bits (120), Expect = 2e-18 Identities = 328/503 (65%), Gaps = 9/503 (2%) Strand=Plus/Minus Query 156027 GGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGA 156083 || |||| |||||| ||||| || || |||| ||||| ||||||||||| | Sbjct 373462 GGTTCCAAATACATGGCAAAGGCTCCTGGCCGCTTGTTTCCACCTTGATCTACATATCTC 373403 Query 156084 GCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCG 156143 || || || || || || | | |||||| || | || || ||| ||||| || || Sbjct 373402 GCGGTATTGTTAAATACCCTCAACATAGGGATCAATCCGTTAGAATGACCATTCGTACCA 373343 Query 156144 CGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT 156203 ||||| ||||| || | || | ||||| | || || ||||| ||||| | Sbjct 373342 GCAATATATGAACCTGAGGCTCGGATGTTATGGACATTAAGGCCAATCCCACCAGCAGTC 373283 Query 156204 TTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCC 156263 || || || || || ||| | |||| | |||| ||||| || || ||||| | | Sbjct 373282 TTGGAGATCATGGCACAAGACTTGAGGGTATCGTAAATTCCTTCGATCGAGTCATCCTTC 373223 Query 156264 ATTGATAGTAGATAGCACGAACTT---AATTGAGGTCGTGGTGTTCCAGCGTTGAATAGT 156320 || | | ||| | | ||||| | |||||| | ||| || ||||| || || || Sbjct 373222 ATAGTCA--AGA-GGAAACAACTTGACATTTGAGGCCTTGGGGTCCCAGCATTAAACAGG 373166 Query 156321 GTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTC 156380 | || | |||||| ||||||| || | |||||| || | || || || | ||| Sbjct 373165 ATCGGAGATGCATGCGTAAAATATTTTTCAGACATGTAGTTATAAGTTTCAATGGCCTTG 373106 Query 156381 TCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCT 156440 || | || || || || | | || || | ||| ||| || ||||| | |||| Sbjct 373105 TCGATATCCTCACCATGGATCCCAACAGCAACACGCATGAGCATTTGTTGAGGCCTCTCT 373046 Query 156441 ACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAA 156500 || ||| ||||| || || ||||||| |||||||| || ||||| ||||| || Sbjct 373045 ACTATCTTGCCATCGATCTTGAGGAGGTATGATCGTTCCAGGGTCTTAAAGCCGAAGTAG 372986 Query 156501 TCAAACAGAAAATCACGGTTGTA 156523 | ||| ||||| || | ||| Sbjct 372985 TTAAAGTTGAAATCGCGATCGTA 372963 >seq60 Length=531780 Score = 104 bits (114), Expect = 7e-17 Identities = 232/340 (68%), Gaps = 14/340 (4%) Strand=Plus/Plus Query 59990 CCAGTACCAATACCCTTTGTTCCATTGATAAGAATCATCGGGATAATTGGGATATAATAA 60049 || || ||||| |||| || |||||| | ||| | ||| ||||| | || ||||| | Sbjct 143229 CCTGTTCCAATGCCCTCTGCTCCATTAACAAGGACCATGGGGATCACAGGCATATACCAC 143288 Query 60050 ACTGGCTCAACACTATCACCATCATCTTTTAAGTATGTTAAAACCTTGTCGTCA--ATTT 60107 ||||||||| | |||||||||||| || ||||| ||||| | ||| ||| | | Sbjct 143289 TCTGGCTCAATCCAATCACCATCATCGTTCAAGTAAGTTAAGAGGGGGTCATCATGAATG 143348 Query 60108 CGGGAAATATAGCCCGAGTAAT--CTTGGATAATTGTGTGAAAATATACCTCTCGGATGC 60165 || | ||| || || ||||| || |||| |||||| ||||| | | || Sbjct 143349 TGGAAGATACAG--CGGGTAATGGCTGGGAT--CGCTGTGAAGATATAACGGGCACTGGC 143404 Query 60166 TGCGTCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAA-TAGATTAA 60224 || || ||||| || | | | | |||||||| || || || || ||| || | Sbjct 143405 AGCATCTTTGCCTCCTTGCATTCTGCTACCAAATTGACC-AACGGGTGAAAGTAGGTTGA 143463 Query 60225 TGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCAT--TTAAACTGGC 60282 ||||||| |||||||||||| || ||||| |||||||| | ||| | ||||| Sbjct 143464 TGTTGTTGCTGCCTACGAAATTCTGTGCGAGGCCAACAATTG--TCATTGTCAAACTTTG 143521 Query 60283 TTCACCGTGATGATATCCAGAATGTTCTGAAACATATCCA 60322 |||||| || |||||| | || | || || || || ||| Sbjct 143522 TTCACCATGGTGATATGCGGATTTCTCAGACACGTACCCA 143561 >seq57 Length=574579 Score = 102 bits (112), Expect = 2e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 ||||||| ||| ||||| ||| |||||| || || ||||| ||| || || | Sbjct 520856 TTCCTTGCATTCGCAAGAAGGCTGCCTGGGCCATGAAGTGGATTTCTGACCAGGACGCAA 520915 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 |||||| ||| | || || ||||||| || || ||||| || ||| ||| || | Sbjct 520916 CCTTTGCTGAACGTTTGGTCGCCTTTGCTGCTGTTGAAGGCATCTTCTTCTCTGGCGCAT 520975 Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 || || || |||||||| |||||||||||| | | ||||| ||| || || |||| Sbjct 520976 TCGCTTCCATCTTTTGGCTCAAAAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACG 521035 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 |||| || || | || |||| || ||||| || || ||| Sbjct 521036 AACTCATCTCGCGTGATGAGGGTCTCCACACTGATTTCGCC 521076 >seq1 Length=1854208 Score = 100 bits (110), Expect = 8e-16 Identities = 228/341 (67%), Gaps = 9/341 (3%) Strand=Plus/Minus Query 156036 TACATAGCAAAACTACCATTCCTCTT---GCCACCCTGATCTACATACCGAGCAGTCTTA 156092 ||||| ||||| || || || || |||||| || | |||| | ||||| || | Sbjct 982105 TACATGGCAAACGATCCGTTTCTTTTCCCGCCACCTTGGTTTACAAAGCGAGCGGTATCG 982046 Query 156093 TTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGC 156152 |||||||| | ||||| || | || ||||| || ||||||||||||| ||| | Sbjct 982045 TTGAAGACGCGAAGCATGGGGACGATGCCATTCGAGTTGCCATTGGTTCCAGCAATGTAT 981986 Query 156153 GAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATT 156212 || || |||| |||| || || | | | |||| || |||| ||| ||||| Sbjct 981985 GATCCCGATGCACGAATTTTTTGGAAACTAATACCAACGCCGCCTGCAGCTTTGGAAATC 981926 Query 156213 TGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGT 156272 ||| |||| ||| | || | | | || || |||||| ||| ||| ||||| | | Sbjct 981925 AGAGAGCATGTCTTCAAGGTGTCGTAGATGCCCTCAATACTATCGTCTGCCATTTGAACT 981866 Query 156273 AGATAGCACGAACTT---AATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTT 156329 | || | | ||| | ||||| || ||||||||||| || || | ||||| || Sbjct 981865 A---AGAAGCAGCTTGACATCTGAGGACGAGGTGTTCCAGCATTAAACAACGTAGGAGTC 981809 Query 156330 GCATGAATAAAATACTTATTAGACATATAATCGTATGTCTC 156370 ||||| ||||||| || | ||||| | | |||||||| Sbjct 981808 GCATGTGTAAAATATTTTTCGGACATGAAGTTATATGTCTC 981768 Score = 87.8 bits (96), Expect = 5e-12 Identities = 216/320 (68%), Gaps = 6/320 (2%) Strand=Plus/Plus Query 289027 TTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 || || | |||||||||||| || || || || | ||| || | || | | || | Sbjct 338341 TTTCCGATAGCATCAATTTCATCTATAAAGATAATACAAGGTGCATGCTTCTTGGCGCTC 338400 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 ||||| || || | || || || ||||| | ||||||| |||| || |||||||| || Sbjct 338401 GCAAACAAATCACGAACGCGTGAGGCTCCCACACCAACAAACATCTCCACAAATTCTGAT 338460 Query 289147 GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | || || | ||| | ||| |||||| ||||| ||| | |||| || ||| Sbjct 338461 CCAGAGACACTCAAGAAGGGTACTCCTGCTTCACCTGCCGTCGCCTTTGCCAATAGGGTC 338520 Query 289207 TTACCTGTTCCAGGTGGTCC-CTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAG 289264 || || ||||||||||| || ||| || | | | ||||| || | || || |||| Sbjct 338521 TTTCCAGTTCCAGGTGGCCCACTC-AAAATAGCGCCCTTGGGGATCTTGGCTCCCAATTT 338579 Query 289265 ACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCT 289324 | | || ||||| |||| | ||||| ||||| ||| || ||| || |||| Sbjct 338580 TC-TGTAGGCTTCAGGATTCTTGAGAAATTTTACAAACTCCATAATCTCAACCTTAGCCT 338638 Query 289325 CATCACAT-CCTGCTACATC 289343 | || ||| ||||| ||||| Sbjct 338639 CGTC-CATACCTGCAACATC 338657 >seq51 Length=1787510 Score = 98.7 bits (108), Expect = 3e-15 Identities = 111/146 (76%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 251843 CGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCAT 251902 |||||||||||||| ||||| ||||| || |||||||| || |||||| | | || | Sbjct 349076 CGATAGTCATACGAGAAGGAATGGCATGTGGGTTGATGATAATATCGGGTGTGATGCCTT 349135 Query 251903 CAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTTGTCCG 251961 | || || || |||||||||| || | ||| || | ||||| || |||||||| ||| Sbjct 349136 CTGCTGTAAAAGGCATATCCTCTT-GACGATATGTGATACCAATGGTGCCCTTTTGACCG 349194 Query 251962 TGACGAGAACTGAACTTATCACCAAT 251987 |||||||| |||||| || || || Sbjct 349195 TGACGAGATGCGAACTTGTCTCCCAT 349220 >seq84 Length=1068272 Score = 93.3 bits (102), Expect = 1e-13 Identities = 164/236 (69%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 289027 TTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 || |||| |||||||| ||||||| || || | || || | ||| | | ||| | Sbjct 214293 TTTCCAATTGCATCAATCTCGTCAACAAAGATAATGCAAGGGGCATTCTTCTTTGCACTC 214234 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 ||||| || || | ||||| || ||||||| ||||||| |||| || |||||||| || Sbjct 214233 GCAAACAAATCACGAACACGTGAGGCTCCAACACCAACAAACATCTCCACAAATTCTGAT 214174 Query 289147 GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | || || | || | ||| || |||||||| || |||| || | ||| Sbjct 214173 CCAGAGACGCTCAAAAACGGAACACCAGCCTCGCCTGCAGTCGCTTTCGCAAGCAACGTC 214114 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAA---CTCCCTTTGGTACTTTTGCCCC 289259 || ||||||||||| ||| || ||| |||| ||||||| || | ||| ||||| Sbjct 214113 TTTCCTGTTCCAGGAGGT-CCACTA--AGAATGGCTCCCTTGGGGATTTTGGCCCC 214061 >seq62 Length=1732855 Score = 87.8 bits (96), Expect = 5e-12 Identities = 129/180 (72%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 353958 GAATTCCCGCTGATGAGATATAATAATCAC---ACCCCCAAGATAGCTCTTAATTGCTGT 354014 ||| || || ||||| || || |||| || ||| |||| | | |||||| || | Sbjct 138230 GAAATCACGATGATGTGAAATGATAACAACTCCACCGCCAAACT--CCCTTAATGCCTCT 138287 Query 354015 GGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAAC 354074 | | | |||||||||||| ||||| || | | |||| ||||| || || || | | || Sbjct 138288 GTCAA-AGCACCAAGCGAATCACGATCCAAGTAATTGGTAGGCTCATCCAGAACCAAAAT 138346 Query 354075 GTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 ||| || | || |||||| || ||||| || || ||||| || |||||||| || || || Sbjct 138347 GTGAGGGTTCAACCACATGGCAGCAGCAAGGACGACCTTGACTTTCTGTCCTCCCGAGAG 138406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471814997642506