Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq128 125 9e-23 seq58 109 7e-18 seq106 104 3e-16 seq57 100 3e-15 seq113 95.1 1e-13 seq47 91.5 2e-12 >seq128 Length=917205 Score = 125 bits (138), Expect = 9e-23 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||| ||| | | ||| ||||| || |||||||| |||||||||| || Sbjct 807598 GCTTGGCAAGTTCACCGGGAAGGATGAGGCGAACAGCGGTCTGAATCTCGCGCGAAGAGA 807539 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| || || || | ||||| | | ||||| || | | Sbjct 807538 TAGTGGAGCGCTTGTTGTAGGCAGCAAGCTTGGAAGCCTCACCGGCAATGCGCTCAAAGA 807479 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | |||||||| |||||||| | | ||||| | |||||||||||| || ||||||| Sbjct 807478 TATCGTTGACGAACGAGTTGAGAATGGACATAGCCTTGTTGGAGATACCGGTATCGGGGT 807419 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | |||||||| | |||||||||||| | || ||||| Sbjct 807418 GGACCTGCTTCAAGACCTTGTAGATGTAAGAAGAGTA 807382 >seq58 Length=573131 Score = 109 bits (120), Expect = 7e-18 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 1592171 TTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGC 1592230 ||||| | ||||| || |||||||| || || |||||||| | |||||| |||| ||| Sbjct 30284 TTTGAAATCATCCTTGCTGCCAACTATCTGGATATCAAGCCCTTACTCGATGTTGGATGC 30343 Query 1592231 AAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAAC 1592290 ||| |||| ||||| |||||||||||||| | ||||||||||| || || ||| ||| Sbjct 30344 AAGACTGTTGCCAATTTGATCAAGGGCAAGACCCCCGAGGAGATTCGTAAACTCTTCAAC 30403 Query 1592291 ATC 1592293 ||| Sbjct 30404 ATC 30406 >seq106 Length=977852 Score = 104 bits (114), Expect = 3e-16 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||| || | | ||| || || || ||||||||||||||||| | || Sbjct 701488 GCTTGGCGAGTTCACCAGGAAGGATAAGACGGACAGCGGTCTGGATCTCGCGAGAAGAGA 701429 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||||| | || || | ||||| | ||||||| || | | Sbjct 701428 TAGTAGAACGCTTGTTATAAGCAGCGAGCTTGGAAGCCTCACCGGCGATGCGCTCAAAGA 701369 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | || ||||| |||||||| | | ||||| | |||||||||||| || |||||||| Sbjct 701368 TATCATTGACGAACGAGTTGAGAATGGACATGGCCTTGTTGGAGATACCAGTGTCGGGGT 701309 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | |||||||| | ||||| |||||| | || ||||| Sbjct 701308 GGACCTGCTTCAAGACCTTATAGATGTAGGAGGAGTA 701272 >seq57 Length=574579 Score = 100 bits (110), Expect = 3e-15 Identities = 135/187 (72%), Gaps = 11/187 (6%) Strand=Plus/Minus Query 869187 CGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCC 869246 ||||| ||| | ||||||| |||| || || |||||||| || ||||| ||||||| Sbjct 521048 CGCGA--GATGAGTTCGTTGGAGAAGGTCAGACCAGGCATGAGACCACGCTTTTTGAGCC 520991 Query 869247 AAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGA 869306 ||||||||| ||| ||| ||||| |||||||| || || || |||||| ||| | Sbjct 520990 AAAAGATGGAAGCGAATGCGCCAGAGAAGAAGATGCCTTCAACAGCAGCAAAGGCGACCA 520931 Query 869307 GCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGCCCAGTCGG 869363 || || |||||||| || |||| || ||||||||||| |||||| | | Sbjct 520930 AACGTTCAGCAAAGGTTGCG------TCCTGGTCAGAAATCCACTTCATGGCCCAGGCAG 520877 Query 869364 CCTTTTT 869370 |||| || Sbjct 520876 CCTTCTT 520870 >seq113 Length=122364 Score = 95.1 bits (104), Expect = 1e-13 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || |||||| | || || || ||||| ||| | || |||||||| | |||||| | || Sbjct 38454 CTGTTTGAGATCATTCTTGCTGCCAATTACTTAGATATCAAGCCCTTACTCGATGTAGGA 38513 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 || ||| | |||||||| || || |||||||| ||||||||||||| || | | |||| Sbjct 38514 TGTAAGACAGTGGCCAATATTATTAAGGGCAAAACGCCCGAGGAGATTCGGATGGCCTTC 38573 Query 1592288 AACAT 1592292 ||||| Sbjct 38574 AACAT 38578 >seq47 Length=818200 Score = 91.5 bits (100), Expect = 2e-12 Identities = 188/277 (68%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || ||| || || || || ||||| | ||| |||| || ||||| || | | || || Sbjct 305007 GCCCTGATCAACATAACGAGCCGTATTGTTGTAGACACGAAGCATAGGAATCAACCCATT 304948 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 ||| | ||||| || || || | ||| | || | || || | ||||| || Sbjct 304947 GGAATATCCGTTCGTTCCAGCAATGTATGAACCCGACGCACGAATGTTGTGAATATTAAG 304888 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 || ||||| || || | || ||||| | || || ||||| || || ||||| || Sbjct 304887 ACCAATGCCTCCAGCGGTTTTCGAGATCATGGCACAGGTCTTGAGGGTATCATAGATACC 304828 Query 1630242 CTCGATCGAGTCGGCCTTCAT-GTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCG 1630300 ||||||||| || ||||||| ||| || ||||| || || || | || ||| | | | Sbjct 304827 CTCGATCGAATCATCCTTCATCGTCAACAAGAAA-CAAGATGACATCTGAGGGCGAGGTG 304769 Query 1630301 TGCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAA 1630337 | || || |||||||||||||||| || |||||| Sbjct 304768 TTCCAGCATTGAAGAGCGTGGGCGAAGCATGGGTGAA 304732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107127875073746