Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq128 159 5e-33 seq106 150 3e-30 seq95 118 2e-20 seq47 109 9e-18 seq58 100 5e-15 seq57 93.3 7e-13 seq1 89.7 8e-12 >seq128 Length=917205 Score = 159 bits (176), Expect = 5e-33 Identities = 182/242 (75%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || |||||||||||||| |||||||||||| |||| ||||| ||| | | Sbjct 807637 TGTACTTAGTAACAGCCTTGGTACCCTCAGAGACGGCGTGCTTGGCAAGTTCACCGGGAA 807578 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| ||||| || |||||||| |||||||| | ||| ||| ||||||||| || Sbjct 807577 GGATGAGGCGAACAGCGGTCTGAATCTCGCGCGAAGAGATAGTGGAGCGCTTGTT-GTAG 807519 Query 1485590 GC-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || || || | ||||| | | ||||| || | || |||||||| |||||||| Sbjct 807518 GCAGCAAGCTTGGAAGCCTCACCGGCAATGCGCTCAAAGATATCGTTGACGAACGAGTTG 807459 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | || ||||| | ||||||||||| || |||||||| |||||||| | |||||| Sbjct 807458 AGAATGGACATAGCCTTGTTGGAGATACCGGTATCGGGGTGGACCTGCTTCAAGACCTTG 807399 Query 1485709 TA 1485710 || Sbjct 807398 TA 807397 >seq106 Length=977852 Score = 150 bits (166), Expect = 3e-30 Identities = 204/281 (73%), Gaps = 5/281 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||||||||| ||||| |||||| |||| ||||| || | | Sbjct 701527 TGTACTTGGTAACAGCCTTGGTACCCTCAGAGACAGCGTGCTTGGCGAGTTCACCAGGAA 701468 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || || || ||||||||||||||||| | ||| || ||||||||| | Sbjct 701467 GGATAAGACGGACAGCGGTCTGGATCTCGCGAGAAGAGATAGTAGAACGCTTGTTA-TAA 701409 Query 1485590 GC-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || || || | ||||| | ||||||| || | || || ||||| |||||||| Sbjct 701408 GCAGCGAGCTTGGAAGCCTCACCGGCGATGCGCTCAAAGATATCATTGACGAACGAGTTG 701349 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | || ||||| | ||||||||||| || ||||||||| |||||||| | ||||| Sbjct 701348 AGAATGGACATGGCCTTGTTGGAGATACCAGTGTCGGGGTGGACCTGCTTCAAGACCTTA 701289 Query 1485709 TAAACAAAGGACGAGTACGAGGCATA---GTTTTTCTTGCG 1485746 || | |||| ||||| | || | | |||||||||| Sbjct 701288 TAGATGTAGGAGGAGTAAGTTTCAGAACGGGTTTTCTTGCG 701248 >seq95 Length=994324 Score = 118 bits (130), Expect = 2e-20 Identities = 182/257 (71%), Gaps = 2/257 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| || || || || ||||||||||| || || || ||| | || ||||| ||| | | Sbjct 596648 TGTATTTTGTAACAGCTTTGGTACCCTCAGAAACAGCATGCTTTGCAAGTTCACCGGGGA 596589 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| || || || ||||| |||||||||| | ||| || |||||| || || Sbjct 596588 GGATCAAACGGACAGCAGTCTGAATCTCGCGGGAGGAGATAGTTGAGCGCTTATT-GTAA 596530 Query 1485590 GC-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || || || | |||||| | || || || | || || || |||||||||||| Sbjct 596529 GCAGCAAGCTTGGAGGCCTCTCCAGCAATACGCTCAAAGATATCATTCACAAACGAGTTC 596470 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | || ||||| | ||||| || || || ||||| || |||||||| | |||||| Sbjct 596469 AAAATGGACATGGCCTTGTTCGAAATACCGGTATCGGGATGAACCTGCTTCAAGACCTTG 596410 Query 1485709 TAAACAAAGGACGAGTA 1485725 |||| | |||| ||||| Sbjct 596409 TAAATATAGGAGGAGTA 596393 >seq47 Length=818200 Score = 109 bits (120), Expect = 9e-18 Identities = 182/263 (69%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || ||| || ||||| || ||||| | ||| |||| || ||||| || | | || || Sbjct 305007 GCCCTGATCAACATAACGAGCCGTATTGTTGTAGACACGAAGCATAGGAATCAACCCATT 304948 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 ||| | ||||| || || || | ||| | ||||| || || | ||||| || Sbjct 304947 GGAATATCCGTTCGTTCCAGCAATGTATGAACCCGACGCACGAATGTTGTGAATATTAAG 304888 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 || ||||| || || | || ||||| | || || | || || || || ||||| || Sbjct 304887 ACCAATGCCTCCAGCGGTTTTCGAGATCATGGCACAGGTCTTGAGGGTATCATAGATACC 304828 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 ||||||||| || ||||||| ||||| || || || || | || ||||| | || Sbjct 304827 CTCGATCGAATCATCCTTCATCGTCAACAAGAAACAAGATGACATCTGAGGGCGAGGTGT 304768 Query 2073777 GCCGGCATTGAAGAGCGTGGGCG 2073799 || ||||||||||||||||||| Sbjct 304767 TCCAGCATTGAAGAGCGTGGGCG 304745 >seq58 Length=573131 Score = 100 bits (110), Expect = 5e-15 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 2035632 TTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGC 2035691 ||||| | ||||| || |||||||| || || ||||||||| | |||||| | || ||| Sbjct 30284 TTTGAAATCATCCTTGCTGCCAACTATCTGGATATCAAGCCCTTACTCGATGTTGGATGC 30343 Query 2035692 AAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAAC 2035751 ||||| || ||||| | |||||||||||| | |||||||| || || || ||| ||| Sbjct 30344 AAGACTGTTGCCAATTTGATCAAGGGCAAGACCCCCGAGGAGATTCGTAAACTCTTCAAC 30403 Query 2035752 ATC 2035754 ||| Sbjct 30404 ATC 30406 >seq57 Length=574579 Score = 93.3 bits (102), Expect = 7e-13 Identities = 132/184 (72%), Gaps = 5/184 (3%) Strand=Plus/Minus Query 794348 CGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCC 794407 ||||| ||| | ||||||| ||| || || |||||||| || ||||| ||||||| Sbjct 521048 CGCGA--GATGAGTTCGTTGGAGAAGGTCAGACCAGGCATGAGACCACGCTTTTTGAGCC 520991 Query 794408 AAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGA 794467 ||||||||| | ||| ||| ||||| |||||||| || || || |||||| |||| | Sbjct 520990 AAAAGATGGAAGCGAATGCGCCAGAGAAGAAGATGCCTTCAACAGCAGCAAAGGCGACCA 520931 Query 794468 GCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCT 794527 || || ||||| || | | ||| | ||||||||||| ||||| | |||| Sbjct 520930 AACGTTCAGCAAAGGTTGC---GTCCTGGTCAGAAATCCACTTCATGGCCCAGGCAGCCT 520874 Query 794528 TTTT 794531 | || Sbjct 520873 TCTT 520870 >seq1 Length=1854208 Score = 89.7 bits (98), Expect = 8e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 |||| ||| |||| || || ||||| |||||||| |||||||| || | ||| || || Sbjct 982069 TGGTTTACAAAGCGAGCGGTATCGTTGAAGACGCGAAGCATGGGGACGATGCCATTCGAG 982010 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | ||| ||||| || || | ||| | ||||| || || | || || || || Sbjct 982009 TTGCCATTGGTTCCAGCAATGTATGATCCCGATGCACGAATTTTTTGGAAACTAATACCA 981950 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 | |||||| || || ||||| || || | ||| | |||| || |||||||||||||| Sbjct 981949 ACGCCGCCTGCAGCTTTGGAAATCAGAGAGCATGTCTTCAAGGTGTCGTAGATGCCCTCA 981890 Query 2073721 AT 2073722 || Sbjct 981889 AT 981888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916231720310582