Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq84 145 5e-30 seq53 127 1e-24 >seq84 Length=1068272 Score = 145 bits (160), Expect = 5e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||||| |||| ||| ||||||||| ||||||||||| || || | || |||| Sbjct 720884 CAAGACCAAATGAAGGGTAGACTCCTTCTGGATGTTATAGTCAGAGAGAGTACGGCCATC 720825 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| ||||| ||||| || || ||||||||| | || | ||||||||||| Sbjct 720824 CTCAAGCTGCTTACCGGCAAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTC 720765 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || |||||| | || | || || |||||| |||| ||| ||||| Sbjct 720764 TTGGATCTTCTGCTTGACGTTGTCAATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGT 720705 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGA 34979 ||| || ||||| ||||| || ||||||||||||| Sbjct 720704 CTTGCCGGTGAGAGTCTTAACGAAGATCTGCATGA 720670 Score = 125 bits (138), Expect = 5e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| |||| |||| ||||||||||||||||||||| || ||| | || |||| || Sbjct 721564 ACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCAGAAAGGGTACGGCCATCCTCA 721505 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || ||||| || || || || || || ||||||||| | || | |||||||| || | Sbjct 721504 AGCTGCTTGCCAGCAAAAATGAGGCGCTGCTGGTCTGGGGGAATACCCTCCTTATCTTGG 721445 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || || || ||||| | || | ||| || ||||| |||| ||| |||||||| Sbjct 721444 ATCTTCTGCTTGACATTGTCAATGGTATCAGAGGATTCGACCTCAAGGGTGATGGTCTTG 721385 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | |||||| || || |||||||| Sbjct 721384 CCGGTCAAGGTCTTGACGAAAATCTGCAT 721356 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||||| |||| || ||||||||| ||||||||||| || ||| | || |||| Sbjct 721112 CAAGACCAAATGAAGAGTAGACTCCTTCTGGATGTTATAGTCAGAAAGGGTACGGCCATC 721053 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| ||||| ||||| || || ||||||||| | || | ||||| ||||| Sbjct 721052 CTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCTTTGTC 720993 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || ||||| | || | ||| || |||||| || | ||| ||||| Sbjct 720992 TTGGATCTTCTGCTTGACATTGTCAATGGTATCAGAGGACTCGACCTCGAGGGTGATGGT 720933 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || | |||||| || || |||||||| Sbjct 720932 CTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 720900 >seq53 Length=681236 Score = 127 bits (140), Expect = 1e-24 Identities = 159/216 (74%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| ||| |||||| ||||| ||||| || || || | || |||| Sbjct 253055 AGGACCAAGTGAAGGGTCGACTCCTTTTGAATATTATAATCGGAAAGCGTACGTCCATCT 253114 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||||| || ||||| || || ||||||||| | || | || |||||||| Sbjct 253115 TCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCC 253174 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | ||||| ||||| || || | ||||| || || ||| || || | || || Sbjct 253175 TGGATTTTCTGTTTAAC--AT--TGTCGATAGTGTCGGAGGACTCTACCTCCAAAGTAAT 253230 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || ||||| ||||| ||||| |||||||| Sbjct 253231 GGTCTTGCCGGTGAGTGTCTTGACAAAAATCTGCAT 253266 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | |||| ||||||||||| |||||||| || || |||| |||| Sbjct 252599 AGAACTAGGTGGAGGGTGGATTCCTTCTGAATATTATAGTCAGAGAGCGTGCGGCCATCC 252658 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || ||||||||||| || || || ||||||||| | || | || |||||||| Sbjct 252659 TCAAGCTGTTTTCCGGCGAAAATAAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCC 252718 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || |||||| | || | || | ||| || || | || || ||| Sbjct 252719 TGAATCTTCTGCTTGACGTTGTCGATGGTGTCGGAAGACTCAACTTCCAAAGTGATTGTC 252778 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||| ||||| || || |||||||| Sbjct 252779 TTGCCAGTGAGTGTCTTGACGAAAATCTGCAT 252810 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| ||| |||||| || || || ||||| || || |||| |||| Sbjct 252143 AGGACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTGCGACCATCC 252202 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || ||||||||||| || || || ||||||||| | || | || |||||||| Sbjct 252203 TCAAGCTGTTTTCCGGCGAAAATAAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCC 252262 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || |||||| | || | || | ||| || || | || || ||| Sbjct 252263 TGAATCTTCTGCTTGACGTTGTCGATGGTGTCGGAAGACTCAACTTCCAAAGTGATTGTC 252322 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||| ||||| || || |||||||| Sbjct 252323 TTGCCAGTGAGTGTCTTGACGAAAATCTGCAT 252354 Score = 100 bits (110), Expect = 2e-16 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| ||| |||||| || || || ||||| || || | || |||| Sbjct 252371 AGGACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTACGACCATCT 252430 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || |||||||||||||| || || ||||||||| | || | || |||||||| Sbjct 252431 TCAAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCC 252490 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || || ||||| | ||||||| || || ||| || || | || || Sbjct 252491 TGAATCTTCTGCTTGAC----GTTATCGATGGTGTCGGAGGACTCAACTTCCAAAGTGAT 252546 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || | ||||| || || |||||||| Sbjct 252547 AGTTTTACCGGTTAAAGTCTTGACGAAAATCTGCAT 252582 Score = 100 bits (110), Expect = 2e-16 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| ||| |||||| || || || ||||| || || | || |||| Sbjct 252827 AGGACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTACGACCATCT 252886 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || |||||||||||||| || || ||||||||| | || | || |||||||| Sbjct 252887 TCAAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCC 252946 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || || ||||| | ||||||| || || ||| || || | || || Sbjct 252947 TGAATCTTCTGCTTGAC----GTTATCGATGGTGTCGGAGGACTCAACTTCCAAAGTGAT 253002 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || | ||||| || || |||||||| Sbjct 253003 AGTTTTACCGGTTAAAGTCTTGACGAAAATCTGCAT 253038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692252225422