Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq84 136 3e-27 seq53 132 4e-26 >seq84 Length=1068272 Score = 136 bits (150), Expect = 3e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| ||||||||||| ||||| || || ||||||||||| || | || ||| || | Sbjct 721570 CGCAATACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCAGAAAGGGTACGGCCA 721511 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || ||||||||| | || | | ||||| || || ||||||||||| || Sbjct 721510 TCCTCAAGCTGCTTGCCAGCAAAAATGAGGCGCTGCTGGTCTGGGGGAATACCCTCCTTA 721451 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || || |||||| | || | || ||||| ||| || ||||| || || Sbjct 721450 TCTTGGATCTTCTGCTTGACATTGTCAATGGTATCAGAGGATTCGACCTCAAGGGTGATG 721391 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||| || || || |||||||| Sbjct 721390 GTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 721356 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| ||||||||||| || || || || || |||||||| || | || ||| || Sbjct 721115 ACGCAAGACCAAATGAAGAGTAGACTCCTTCTGGATGTTATAGTCAGAAAGGGTACGGCC 721056 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || ||||| ||| | || | | ||||| || || |||||||||||||| Sbjct 721055 ATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCTTT 720996 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || || |||||| | || | || ||||| || || || || || || Sbjct 720995 GTCTTGGATCTTCTGCTTGACATTGTCAATGGTATCAGAGGACTCGACCTCGAGGGTGAT 720936 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||| || || || |||||||| Sbjct 720935 GGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 720900 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| ||||||||||| || || || || || |||||||| || | | || || Sbjct 720887 ACGCAAGACCAAATGAAGGGTAGACTCCTTCTGGATGTTATAGTCAGAGAGAGTACGGCC 720828 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || || ||| | || | | ||||| || || ||||||||||| || Sbjct 720827 ATCCTCAAGCTGCTTACCGGCAAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTT 720768 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || || ||||| | || | ||||| || || || ||||| || || Sbjct 720767 GTCTTGGATCTTCTGCTTGACGTTGTCAATGGTGTCGGAGGACTCGACCTCAAGGGTGAT 720708 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | || ||||| || |||||||| Sbjct 720707 GGTCTTGCCGGTGAGAGTCTTAACGAAGATCTGCAT 720672 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||||||||| || || ||||| || || || ||||| ||||| | | ||| || | Sbjct 721342 CGCAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTACGGCCA 721283 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | || ||||| || | || | | ||||| || || ||||| || || || Sbjct 721282 TCTTCCAACTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCTGGAGGAATGCCTTCCTTA 721223 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || || ||||| | || | |||||||| || || ||||| || || Sbjct 721222 TCTTGAATCTTCTGCTTGACGTTATCGATCGTGTCAGAGGACTCGACCTCAAGGGTGATG 721163 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||| || || || |||||||| Sbjct 721162 GTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 721128 >seq53 Length=681236 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| || ||||| ||||| || || || |||||||| |||||||| | | Sbjct 253040 CCTCCACGGAGACGGAGGACCAAGTGAAGGGTCGACTCCTTTTGAATATTATAATCGGAA 253099 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || ||||| || |||||| | || | | ||||| || || ||| Sbjct 253100 AGCGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGA 253159 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| || ||||| || | ||| ||||| ||| | || | |||||| || ||||| Sbjct 253160 ATACCTTCCTTGTCCTGGATTTTCTGTTTAACATTGTCGATAGTGTCGGAGGACTCTACC 253219 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTA 29790 || | ||| || || ||||| || | || || ||||| |||||||||||| Sbjct 253220 TCCAAAGTAATGGTCTTGCCGGTGAGTGTCTTGACAAAAATCTGCATTTTA 253270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385218552109458