Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq110 179 3e-39 seq73 100 2e-15 seq48 100 2e-15 seq31 93.3 3e-13 seq13 87.8 1e-11 >seq110 Length=152350 Score = 179 bits (198), Expect = 3e-39 Identities = 529/807 (66%), Gaps = 14/807 (2%) Strand=Plus/Plus Query 282020 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 282079 |||| || ||||||||||| || |||||||| || ||||||| | | ||||||| | Sbjct 53187 TCAACACCCTCGAACAAAGAGTCGACTTCAATGGTGGTTTGAGCCAATGAAGATAAGGTG 53246 Query 282080 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAA 282139 || || |||||||| || || || | || | || ||| || | | Sbjct 53247 CGCTTGGCACGTTCGCAAGCAGTGCGAAGACGGCGGGTGGCACGAGCATCACCAGAGATG 53306 Query 282140 TCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGA---TTATCA 282196 || | || | || | |||||| || || | ||||| ||||| || ||||| Sbjct 53307 TCCTTCTTGTGCTTGCGCTTGAACTCCTCCTTGAA--ATGTTCCAAGA-GAGTGTTATCG 53363 Query 282197 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 282256 ||||||||||||||||| | ||||| ||| | || || | || ||| | || || Sbjct 53364 AAATCTTCACCTCCCAAGTGAGTATCTCCAGCTGTGGCCTTGACGGCGAAGA---CACCT 53420 Query 282257 TCAA-GA--GACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 282313 || || | |||||||| ||||| || || ||||| | ||| |||||||| || Sbjct 53421 CCAGTGATGGTCAAAAGAGAGACATCGAACGTACCGCCACCAAGATCGAAAATAAGAACG 53480 Query 282314 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 282373 | | | || ||| | || ||| | |||||| || | ||| ||||| ||||| || Sbjct 53481 TGCTTCTCCTTGGTCTCCTTAGAATCCAAACCATAGGCGATAGCGGCAGCGGTTGGCTCG 53540 Query 282374 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 282433 |||||||| | | ||||| |||||||||||| || || || |||||||| || | Sbjct 53541 TTAATAATACGGAGAACATCAAGACCAGCAATGGCACCAGCGTCCTTAGTGGCGTGACGC 53600 Query 282434 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATA 282493 || | |||||| || || ||||||||||| || || || | || | || || | Sbjct 53601 TGAGCATCGTTGAAGTAGGCAGGAACAGTGATGACAGCCTTAGTGATAGTCTTGCCGAGC 53660 Query 282494 TAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAA 282553 | || || | | |||||| || | || | ||| | || || | | || || Sbjct 53661 TTGGCCTCAGCGATCTCTTTCATCTTTGTCAAGACCATGGCAGAGATCTCCTGAGGGGAG 53720 Query 282554 TATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATA 282613 ||| ||| ||| ||||| || | || | || | | | | ||| Sbjct 53721 AATTCCTTCTTCTCACCCTGATAGTCAACCTGAACGAAGGGAGCAGTGTCCTTCTCAATG 53780 Query 282614 ACTTTAAATGGCCAATATTTCATATCTG-ATTGAACACTTTGGTCATTAAAATCTCTACC 282672 || | || ||||| | ||||| || | |||| | | |||||| || | ||| Sbjct 53781 ACAGTGAAGGGCCAGTGCTTCATGTCAGCCTTGACCTC-AGGGTCATCGAAGCGGCGACC 53839 Query 282673 AATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGC 282732 || | || || ||||| |||| ||| |||||||| || | ||||| |||| ||||| Sbjct 53840 GATAAGACGCTTGGCATCGAAAACAGTGTTGGTTGGGTTCATAGCAGCCTGATTCTTGGC 53899 Query 282733 TGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATT 282792 ||||| ||||| ||| |||| | || | || | |||||||||||| ||||| || || Sbjct 53900 AGCATCACCAATAAGACGTTCCGAGTCGGAGAAGGCAACATATGATGGTGTTGTACGGTT 53959 Query 282793 ACCTTGATCATTCGCAATAATTTCAAC 282819 |||||| || || ||||| || ||||| Sbjct 53960 ACCTTGCTCGTTAGCAATGATCTCAAC 53986 >seq73 Length=1354255 Score = 100 bits (110), Expect = 2e-15 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 282670 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTT 282729 |||||| | ||||| ||||||||||| || ||||| || || | || |||| || Sbjct 1352344 ACCAATCAGACGTTTGGCATCAAAAATTGTGTTGGTGGGGTTGGCAGCGTACTGATTCTT 1352285 Query 282730 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 282789 ||| |||||||| | ||| | || ||| || |||| ||||| || ||||| | || Sbjct 1352284 GGCGGCATCTCCGACAAGACGCTCGTCCTCAGTGAATGCGACATAGGAGGGAGTGATACG 1352225 Query 282790 ATTACCTTGATCATTCGCAATAATTTCAAC 282819 || |||||||||||| || ||||||||||| Sbjct 1352224 ATGACCTTGATCATTGGCGATAATTTCAAC 1352195 >seq48 Length=811349 Score = 100 bits (110), Expect = 2e-15 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 282670 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTT 282729 |||||| | ||||| ||||||||||| || ||||| || || | || |||| || Sbjct 8403 ACCAATCAGACGTTTGGCATCAAAAATTGTGTTGGTGGGGTTGGCAGCGTACTGATTCTT 8344 Query 282730 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 282789 ||| |||||||| | ||| | || ||| || |||| ||||| || ||||| | || Sbjct 8343 GGCGGCATCTCCGACAAGACGCTCGTCCTCAGTGAATGCGACATAGGAGGGAGTGATACG 8284 Query 282790 ATTACCTTGATCATTCGCAATAATTTCAAC 282819 || |||||||||||| || ||||||||||| Sbjct 8283 ATGACCTTGATCATTGGCGATAATTTCAAC 8254 >seq31 Length=10751 Score = 93.3 bits (102), Expect = 3e-13 Identities = 112/151 (74%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 282670 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGA-TTAACTGCAGCTTGATATT 282728 |||||| | ||||| ||||||||||| || |||| ||| || | || |||| | Sbjct 2353 ACCAATCAGACGTTTGGCATCAAAAATTGTGTTGGGTGGGGTTGGCAGCGTACTGATTCT 2412 Query 282729 TGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGC 282788 |||| |||||||| | ||| | || ||| || |||| ||||| || ||||| | | Sbjct 2413 TGGCGGCATCTCCGACAAGACGCTCGTCCTCAGTGAATGCGACATAGGAGGGAGTGATAC 2472 Query 282789 GATTACCTTGATCATTCGCAATAATTTCAAC 282819 ||| |||||||||||| || ||||||||||| Sbjct 2473 GATGACCTTGATCATTGGCGATAATTTCAAC 2503 >seq13 Length=887893 Score = 87.8 bits (96), Expect = 1e-11 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 432264 AAATCAATGTCTGAAAGATTGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGA 432323 |||||||| || | | ||| || |||||||||||| | | || ||||||||||| Sbjct 681309 AAATCAATCCGTGCACGTCTGAAGGGCAAAGAAGGTCGTTTGCGTGGGAATTTGATGGGT 681250 Query 432324 AAGCGTGTCGATATGTCTGCACGTACAGTTATTACTTCTGATCCTAATATTGCTCTCAAT 432383 || ||||| ||| | || |||||||| || ||||| |||||||| | | | || Sbjct 681249 AAACGTGTGGATTTCTCGGCACGTACGGTCATTACAGGAGATCCTAACCTATCGATTGAT 681190 Query 432384 GAAGTTGGTGTTCCTCTCATTATTGC 432409 || ||||||||||| | || |||||| Sbjct 681189 GAGGTTGGTGTTCCGCGCAGTATTGC 681164 Score = 87.8 bits (96), Expect = 1e-11 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 432264 AAATCAATGTCTGAAAGATTGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGA 432323 |||||||| || | | ||| || |||||||||||| | | || ||||||||||| Sbjct 692575 AAATCAATCCGTGCACGTCTGAAGGGCAAAGAAGGTCGTTTGCGTGGGAATTTGATGGGT 692634 Query 432324 AAGCGTGTCGATATGTCTGCACGTACAGTTATTACTTCTGATCCTAATATTGCTCTCAAT 432383 || ||||| ||| | || |||||||| || ||||| |||||||| | | | || Sbjct 692635 AAACGTGTGGATTTCTCGGCACGTACGGTCATTACAGGAGATCCTAACCTATCGATTGAT 692694 Query 432384 GAAGTTGGTGTTCCTCTCATTATTGC 432409 || ||||||||||| | || |||||| Sbjct 692695 GAGGTTGGTGTTCCGCGCAGTATTGC 692720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740623624783188