Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq53 152 1e-31 seq84 125 1e-23 >seq53 Length=681236 Score = 152 bits (168), Expect = 1e-31 Identities = 179/241 (74%), Gaps = 1/241 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| || || ||||| || || || || || || ||||||||||| | Sbjct 253038 TACCTCCACGGAGACGGAGGACCAAGTGAAGGGTCGACTCCTTTTGAATATTATAATCGG 253097 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| ||||| |||||||||||||| || | || || ||||||| Sbjct 253098 AAAGCGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGAG 253157 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || || || ||| ||||| || || || || | |||| Sbjct 253158 GAATACCTTCCTTGTCCTGGATTTTCTGTTTAACATTGTCGATAGTGTCGGAGGACTCTA 253217 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT-TATATTT 82820 | |||||||| || |||||||| || | ||||| ||||| ||||||||| | | ||||| Sbjct 253218 CCTCCAAAGTAATGGTCTTGCCGGTGAGTGTCTTGACAAAAATCTGCATTTTATGTATTT 253277 Query 82821 T 82821 | Sbjct 253278 T 253278 Score = 141 bits (156), Expect = 2e-28 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||||| ||| || || ||||| ||||| |||||||| |||| Sbjct 252582 TACCGCCGCGAAGACGAAGAACTAGGTGGAGGGTGGATTCCTTCTGAATATTATAGTCAG 252641 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || || || || |||||||| || || || || | || || ||||||| Sbjct 252642 AGAGCGTGCGGCCATCCTCAAGCTGTTTTCCGGCGAAAATAAGACGCTGCTGGTCTGGAG 252701 Query 82702 GTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || |||||||| || |||||||| ||||| || || || || || || || || Sbjct 252702 GAATACCTTCCTTGTCCTGAATCTTCTGCTTG-ACGTTGTCGATGGTGTCGGAAGACTCA 252760 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||||| || |||||||| || | ||||| || || |||||||| Sbjct 252761 ACTTCCAAAGTGATTGTCTTGCCAGTGAGTGTCTTGACGAAAATCTGCAT 252810 Score = 132 bits (146), Expect = 9e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||| || ||||| || || || ||||| || ||||| || | | ||| Sbjct 252139 ACGAAGGACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTGCGACC 252198 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || |||||||| || || || || | || || |||||||| || |||||||| Sbjct 252199 ATCCTCAAGCTGTTTTCCGGCGAAAATAAGACGCTGCTGGTCTGGAGGAATACCTTCCTT 252258 Query 82715 ATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA 82773 || |||||||| ||||| || || || || || || || || ||||||||||| | Sbjct 252259 GTCCTGAATCTTCTGCTTG-ACGTTGTCGATGGTGTCGGAAGACTCAACTTCCAAAGTGA 252317 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||||||| || | ||||| || || |||||||| Sbjct 252318 TTGTCTTGCCAGTGAGTGTCTTGACGAAAATCTGCAT 252354 Score = 129 bits (142), Expect = 1e-24 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| || ||||| || || || ||||| || |||| Sbjct 252354 TACCGCCGCGGAGACGAAGGACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAG 252413 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||| ||||| || |||||||| || ||||| || | || || ||||| | Sbjct 252414 AGAGCGTACGACCATCTTCAAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGG 252473 Query 82702 GTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || |||||||| || |||||||| ||||| || || || || || || | || Sbjct 252474 GAATACCTTCCTTGTCCTGAATCTTCTGCTTG-ACGTTATCGATGGTGTCGGAGGACTCA 252532 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||||| || || || || || || ||||| || || |||||||| Sbjct 252533 ACTTCCAAAGTGATAGTTTTACCGGTTAAAGTCTTGACGAAAATCTGCAT 252582 Score = 129 bits (142), Expect = 1e-24 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| || ||||| || || || ||||| || |||| Sbjct 252810 TACCGCCGCGGAGACGAAGGACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAG 252869 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||| ||||| || |||||||| || ||||| || | || || ||||| | Sbjct 252870 AGAGCGTACGACCATCTTCAAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGG 252929 Query 82702 GTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || |||||||| || |||||||| ||||| || || || || || || | || Sbjct 252930 GAATACCTTCCTTGTCCTGAATCTTCTGCTTG-ACGTTATCGATGGTGTCGGAGGACTCA 252988 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||||| || || || || || || ||||| || || |||||||| Sbjct 252989 ACTTCCAAAGTGATAGTTTTACCGGTTAAAGTCTTGACGAAAATCTGCAT 253038 >seq84 Length=1068272 Score = 125 bits (138), Expect = 1e-23 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || ||||| ||||| || || ||||| || || ||||| || || | | || Sbjct 721342 CGCAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTACGGCCA 721283 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| | || || || || || || || | || || |||||||| || ||||||||| Sbjct 721282 TCTTCCAACTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCTGGAGGAATGCCTTCCTTA 721223 Query 82716 TCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||||| ||| || || || || ||||| ||| | || || || | || || Sbjct 721222 TCTTGAATCTTCTGC-TTGACGTTATCGATCGTGTCAGAGGACTCGACCTCAAGGGTGAT 721164 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| ||||| ||||| || || |||||||| Sbjct 721163 GGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 721128 Score = 125 bits (138), Expect = 1e-23 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||| || || || || || || || ||||| || ||||| ||||| || | | || Sbjct 721570 CGCAATACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCAGAAAGGGTACGGCCA 721511 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || |||||||| || || | || || ||||| || || || |||||| Sbjct 721510 TCCTCAAGCTGCTTGCCAGCAAAAATGAGGCGCTGCTGGTCTGGGGGAATACCCTCCTTA 721451 Query 82716 TCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| ||||| ||| || ||||| ||||| |||||| | ||| || || | || || Sbjct 721450 TCTTGGATCTTCTGC-TTGACATTGTCAATGGTATCAGAGGATTCGACCTCAAGGGTGAT 721392 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| ||||| ||||| || || |||||||| Sbjct 721391 GGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 721356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981825464006782