Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq84 143 3e-29 seq53 123 2e-23 seq57 96.9 3e-15 seq1 93.3 4e-14 >seq84 Length=1068272 Score = 143 bits (158), Expect = 3e-29 Identities = 152/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||||||| | || | | | || || | ||||||||| Sbjct 721324 GTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTACGGCCA-TCTTCCAACTGCTTGCC 721266 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| ||||||| ||||||||||| ||||| ||||||||||| || ||||| ||||| Sbjct 721265 GGCGAAAATGAGGCGCTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGAATCTTCTGCTT 721206 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | |||||| | || ||| || || | ||||| ||| |||||||||| || Sbjct 721205 GACGTTATCGATCGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGTCAAGGT 721146 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 721145 CTTGACGAAAATCTGCAT 721128 Score = 136 bits (150), Expect = 4e-27 Identities = 163/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||| ||||| ||||| || || || || | || | | | ||||| || Sbjct 720877 AAATGAAGGGTAGACTCCTTCTGGATGTTATAGTCAGAGAGAGTACGGCCA-TCCTCAAG 720819 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | ||||| ||||||||||| || || || || |||||||| ||| Sbjct 720818 CTGCTTACCGGCAAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGGAT 720759 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||||| | |||| ||||||| || ||| || || | ||||| ||| ||||| Sbjct 720758 CTTCTGCTTGACGTTGTCAATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCC 720699 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATGGCTTATTTATT 133672 ||| ||||| || ||||| ||||||||| || ||| ||| Sbjct 720698 GGTGAGAGTCTTAACGAAGATCTGCATGACTAATTGATT 720660 Score = 123 bits (136), Expect = 2e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||||||| ||||| || || || || | || | | | ||||| || Sbjct 721561 AAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCAGAAAGGGTACGGCCA-TCCTCAAG 721503 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || ||||||| ||||||||||| || || || || ||||| || ||| Sbjct 721502 CTGCTTGCCAGCAAAAATGAGGCGCTGCTGGTCTGGGGGAATACCCTCCTTATCTTGGAT 721443 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||||| | |||| || || | || || || || | ||||| ||| ||||| Sbjct 721442 CTTCTGCTTGACATTGTCAATGGTATCAGAGGATTCGACCTCAAGGGTGATGGTCTTGCC 721383 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || |||||||||||||| Sbjct 721382 GGTCAAGGTCTTGACGAAAATCTGCAT 721356 Score = 122 bits (134), Expect = 8e-23 Identities = 120/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| || | ||||| ||||||||||| || || || || || ||| Sbjct 721054 TCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCTTTG 720995 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||||| | |||| || || | || ||| || |||| ||||| | Sbjct 720994 TCTTGGATCTTCTGCTTGACATTGTCAATGGTATCAGAGGACTCGACCTCGAGGGTGATG 720935 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || |||||||||| || || |||||||||||||| Sbjct 720934 GTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 720900 >seq53 Length=681236 Score = 123 bits (136), Expect = 2e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| || || |||||||| || | |||| ||| | ||||| || Sbjct 252149 AAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTGCGACCA-TCCTCAAG 252207 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| || || ||| |||| || ||||||||||| ||||| || ||||||||||| || Sbjct 252208 CTGTTTTCCGGCGAAAATAAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGAAT 252267 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||||| | || | ||||||| | ||| || || | |||| || ||||| Sbjct 252268 CTTCTGCTTGACGTTGTCGATGGTGTCGGAAGACTCAACTTCCAAAGTGATTGTCTTGCC 252327 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || |||||||||||||| Sbjct 252328 AGTGAGTGTCTTGACGAAAATCTGCAT 252354 Score = 118 bits (130), Expect = 1e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| || || |||||||| || | ||| ||| | || || || Sbjct 252377 AAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTACGACCA-TCTTCAAG 252435 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| || || ||| | ||||| ||||||||||| || || || ||||||||||| || Sbjct 252436 CTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGAAT 252495 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||||| | || | ||||||| || ||| || || | |||| ||||| || Sbjct 252496 CTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCAACTTCCAAAGTGATAGTTTTACC 252555 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| | ||| || |||||||||||||| Sbjct 252556 GGTTAAAGTCTTGACGAAAATCTGCAT 252582 Score = 118 bits (130), Expect = 1e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| || ||||| ||||| || || | |||| | | | ||||| ||||| || | Sbjct 252613 GGTGGATTCCTTCTGAATATTATAGTCAGAGAGCGTGCGGCCA-TCCTCAAGCTGTTTTC 252671 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| || ||||||||||| ||||| || ||||||||||| ||||| |||| Sbjct 252672 CGGCGAAAATAAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGAATCTTCTGCT 252731 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||||| | ||| || || | |||| || ||||| || || | Sbjct 252732 TGACGTTGTCGATGGTGTCGGAAGACTCAACTTCCAAAGTGATTGTCTTGCCAGTGAGTG 252791 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 252792 TCTTGACGAAAATCTGCAT 252810 Score = 118 bits (130), Expect = 1e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| || || |||||||| || | ||| ||| | || || || Sbjct 252833 AAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTACGACCA-TCTTCAAG 252891 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| || || ||| | ||||| ||||||||||| || || || ||||||||||| || Sbjct 252892 CTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGAAT 252951 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||||| | || | ||||||| || ||| || || | |||| ||||| || Sbjct 252952 CTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCAACTTCCAAAGTGATAGTTTTACC 253011 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| | ||| || |||||||||||||| Sbjct 253012 GGTTAAAGTCTTGACGAAAATCTGCAT 253038 Score = 105 bits (116), Expect = 6e-18 Identities = 157/219 (72%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| || || ||||| |||||| | ||| | | | || || || Sbjct 253061 AAGTGAAGGGTCGACTCCTTTTGAATATTATAATCGGAAAGCGTACGTCCA-TCTTCAAG 253119 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || || | ||||| ||||||||||| ||||| || ||||||||||| ||| Sbjct 253120 TTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGAT 253179 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || || || | | || | ||||||| || ||| || || | || | ||| ||||| Sbjct 253180 TTTCTGTTTAACATTGTCGATAGTGTCGGAGGACTCTACCTCCAAAGTAATGGTCTTGCC 253239 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATGGCTTATTTATT 133672 ||| || || || || ||||||||||| |||| |||| Sbjct 253240 GGTGAGTGTCTTGACAAAAATCTGCAT--TTTATGTATT 253276 >seq57 Length=574579 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 120642 GCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAG 120701 ||| || || || ||||| || ||||| || ||||| || || |||||| || ||||| Sbjct 521079 GCAGGCGAAATCAGTGTGGAGACCCTCATCACGCGAGATGAGTTCGTTGGAGAAGGTCAG 521020 Query 120702 GCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAA 120761 || ||||||| || | | |||| | || |||| || || ||| || ||||| Sbjct 521019 ACCAGGCATGAGACCACGCTTTTTGAGCCAAAAGATGGAAGCGAATGCGCCAGAGAAGAA 520960 Query 120762 CACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTC 120821 | ||| || || ||||||||||||| || || || || || | |||| || ||| Sbjct 520959 GATGCCTTCAACAGCAGCAAAGGCGACCAAACGTTCAGCAAAGGTTG-CGTCCTG--GTC 520903 Query 120822 ---GATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863 ||||||||||||||||| | ||||| ||||| | ||| || Sbjct 520902 AGAAATCCACTTCATGGCCCAGGCAGCCTTCTTGCGAATGCAAGG 520858 >seq1 Length=1854208 Score = 93.3 bits (102), Expect = 4e-14 Identities = 166/237 (70%), Gaps = 8/237 (3%) Strand=Plus/Minus Query 148251 AGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTC 148310 |||| || ||||||||||| ||||||||| | || || || | || | |||| Sbjct 983564 AGATGATGGTTCACCACCTGGAACTCGCCGCTCATAACTCGACGTTGGTAAATGTTGGAT 983505 Query 148311 GTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATG 148370 ||| | |||||||| ||||||||||||| | ||||| ||| | || || ||||| Sbjct 983504 GTATAAGGTTCAAAGCACTCGTTGTTGCCTAGGATCTGACTGGTTGAGGCTGTAGGCATA 983445 Query 148371 TACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCG-- 148428 ||| ||||| || |||||||| | || |||| || || | ||| | || || Sbjct 983444 GGCGCCACCAGTAGTGAGTTGCGTACTCCATACTTTTGGATATT-CTCTTTA-AGACGAT 983387 Query 148429 CCCAGTCCCAGAGCGGCGAC--GGTGTCACGTTCCACATGTCGTACTGCAGAATGCC 148483 |||||| || |||| || || | || ||||||||||||||||| ||||| || Sbjct 983386 CCCAGTTCC--AGCGATCACTAGGCTTGACATTCCACATGTCGTACTGAAGAATACC 983332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483419966099120