Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq49 125 2e-23 seq47 113 1e-19 seq57 93.3 1e-13 >seq49 Length=746914 Score = 125 bits (138), Expect = 2e-23 Identities = 546/857 (64%), Gaps = 9/857 (1%) Strand=Plus/Plus Query 110299 TTGACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGA 110358 || |||| || || || || || || ||||| | || | || || ||||| ||| Sbjct 372982 TTAACTACTTCGGCTTTAAGACCCTGGAACGATCATACCTCCTCAAGATCGATGGCAAGA 373041 Query 110359 TCATTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATA 110418 | | || | |||||||| ||| | | |||||||| |||| || ||||| | |||| Sbjct 373042 TAGTAGAGAGGCCTCAACAAATGCTCATGCGTGTTGCTGTTGGGATCCATGGTGAGGATA 373101 Query 110419 TTAAAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTC 110478 | | | |||||| |||| | | | |||| | || ||||| ||| Sbjct 373102 TCGACAAGGCCATTGAAACTTATAACTACATGTCTGAAAAATATTTTACGCATGCATCTC 373161 Query 110479 CTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGA- 110537 | | ||| ||||| || || || | ||| || | ||| |||| ||| | Sbjct 373162 CGATCCTGTTTAATGCTGGGACCCCAAGGCCTCAAATGTCAAGTTG-TTTCCTCTTGACT 373220 Query 110538 ATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCT 110597 || || ||||| || || ||||| ||||| ||| | || || ||| | || || Sbjct 373221 ATGAAGGATGACTCGATCGAAGGAATTTACGATACCCTCAAGTCTTGTGCCATGATCTCC 373280 Query 110598 AAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATC 110657 || | |||| || ||||| || | || ||| | || || | ||| || |||| Sbjct 373281 AAGACTGCTGGTGGGATTGGCCTTAATGTCCATAACATCCGAGCCTCAGGTTCATATATT 373340 Query 110658 GCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACT 110717 || |||| ||| ||| | ||| | | || ||||| || || || ||| | || Sbjct 373341 GCTGGTACGAATGGTCATTCTAACGGATTGATCCCTATGTTGAGGGTATTTAACAATACC 373400 Query 110718 GCAAAATATGTGAATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATCTATCTCGAA 110774 || | |||||| |||||||||| || | | || | ||||| || ||| | ||| Sbjct 373401 GCGAGATATGTAGATCAAGGTGGAAACAAGCGGCCAGGAGCCTTTGCCATGTATTTGGAA 373460 Query 110775 CCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAA 110834 ||||||||| | || | ||||| || || || ||||| || ||| ||| ||||| Sbjct 373461 CCTTGGCATGCGGACGTGTTTGATTTTTTGGACCTTCGCAAGAATACAGGCAAGGAAGAG 373520 Query 110835 CAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTT 110894 | || || || || || | | | ||||| | || | ||||||||||| || Sbjct 373521 ACTCGTGCTCGAGACTTGTTCCTGGGACTCTGGATCCCTGACCTGTTCATGAAACGAATT 373580 Query 110895 CAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTA 110954 || | |||||| ||| ||| | |||||| | | ||||||||| ||||| Sbjct 373581 GAACAGAATGGCGATTGGAGTCTCTTTTGTCCTGCTGAGGCGCCTGGTCTACAAGATGTC 373640 Query 110955 TATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAA- 111013 | || |||||||||| | || || | || || ||||| | ||| || Sbjct 373641 TGGGGCGAAGAGTTTGAGAAACTCTATATGACCTACGAGCTGGAAGGACGGGCTCGTAAG 373700 Query 111014 ACAAATTCCA-GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAA 111072 || | || | ||||| | || |||||| |||||| || | ||| || ||||||| Sbjct 373701 ACTA--TCAAGGCTCAGAAGCTGTGGTTCGCAATCCTGGAGGCTCAAACAGAGACTGGAA 373758 Query 111073 CTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAA 111132 | || ||||| | ||||||||| ||| ||||| || |||||| ||| || || | Sbjct 373759 CGCCCTATATGCTTTATAAAGATGCCTGTAACCGCAAGTCGAATCAACAGAACTTGGGGA 373818 Query 111133 CAATTAAGTCTAGTAAT 111149 | || |||| ||||||| Sbjct 373819 CTATCAAGTGTAGTAAT 373835 >seq47 Length=818200 Score = 113 bits (124), Expect = 1e-19 Identities = 392/605 (65%), Gaps = 9/605 (1%) Strand=Plus/Plus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 || ||||| |||||||| ||||| || |||| | || || |||||||| || | Sbjct 304573 TACTTTGGATTCAAAACCCTTGAGCGCTCTTACCTTCTCCGGATCAATGGCAAGGTTGCG 304632 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 || | ||||| || ||||| | ||||| || | || || |||||| || || | | Sbjct 304633 GAGAGACCTCAGCATATGTTGATGCGTGTCTCGGTCGGGATCCATGGAGATAATGTGGAC 304692 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCT--ATTCATGCTACTCCTA 110481 | |||||| || || || | || || || || | |||||| | || | Sbjct 304693 AAGGCTATTGAGACCTACAAT-TAC-ATGTCTGAAAAATACTTCACCCATGCTTCGCCCA 304750 Query 110482 CCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGA-ATT 110540 | || || || || ||||| | | || || | ||||| |||||| | | || Sbjct 304751 CGCTCTTCAATGCTGGAACACCTCGCCCTCAGATGTCATCTTG-TTTCTTGTTGACGATG 304809 Query 110541 AACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAA 110600 || |||||||| || || ||||| |||||| | || || ||| | || || ||| Sbjct 304810 AAGGATGATTCGATCGAGGGTATCTATGATACCCTCAAGACCTGTGCCATGATCTCGAAA 304869 Query 110601 AACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCA 110660 | | ||||||| |||||| || | |||| | ||||| | || || | || || Sbjct 304870 ACCGCTGGAGGCATTGGTCTTAATATTCACAACATTCGTGCGTCGGGTTCATACATTGCT 304929 Query 110661 ACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCA 110720 | |||| || ||| | ||| | |||| ||| | | |||| |||| | || || Sbjct 304930 GGAACGAACGGATATTCCAATGGGTTGATTCCTATGCTTCGTGTCTACAACAATACGGCT 304989 Query 110721 AAATATGTGAATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATCTATCTCGAACCT 110777 ||||| |||| || || || | | ||| | ||||| || ||||||||||| Sbjct 304990 CGTTATGTTGATCAGGGCGGCAACAAGCGTCCTGGTGCCTTTGCCATGTATCTCGAACCC 305049 Query 110778 TGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAA 110837 |||||| | ||| | ||||||||| | || ||||| || || ||| || || Sbjct 305050 TGGCATGCCGATGTCTTTGAATTCCTGGATCTTCGCAAGAACACTGGAAAGGAGGAGACC 305109 Query 110838 AGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAA 110897 | || |||||||| || ||||| | ||||| | ||| | ||||||| |||| | | Sbjct 305110 CGTGCTCGTGATTTGTTCTATGCTCTCTGGATCCCTGATCTGTTCATGAGACGTATCGAG 305169 Query 110898 GAAAA 110902 ||||| Sbjct 305170 GAAAA 305174 >seq57 Length=574579 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 131801 AAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGA 131860 ||||| || | ||||| || || |||||| || | ||| | ||| || | | Sbjct 520870 AAGAAGGCTGCCTGGGCCATGAAGTGGATTTCTGACCAGGACGCAACCTTTGCTGAACGT 520929 Query 131861 CTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTT 131920 | || || |||||| ||||||||| || ||||| || || || ||| | | |||||| Sbjct 520930 TTGGTCGCCTTTGCTGCTGTTGAAGGCATCTTCTTCTCTGGCGCATTCGCTTCCATCTTT 520989 Query 131921 TGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGA 131980 ||||| || |||||||| | |||||||| || | || ||||| || |||||||| | Sbjct 520990 TGGCTCAAAAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAACTCATCTCGCGT 521049 Query 131981 GATGAAGCATTGCATACTGAATTTGC 132006 ||||| | | || ||||| || || Sbjct 521050 GATGAGGGTCTCCACACTGATTTCGC 521075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186810701566618