Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq53 111 1e-19 seq84 107 1e-18 >seq53 Length=681236 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || || || ||| ||||| || || |||||||| || || ||| | || || Sbjct 253058 ACCAAGTGAAGGGTCGACTCCTTTTGAATATTATAATCGGAAAGCGTACGTCCATCTTCA 253117 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||| ||||| ||||| || | ||||||||| ||| | || | |||||| ||||| Sbjct 253118 AGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGG 253177 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||||||||| ||||| ||| | |||||| || || || || | || || || || Sbjct 253178 ATTTTCTGTTT-AACATTGTCGATAGTGTCGGAGGACTCTACCTCCAAAGTAATGGTCTT 253236 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || ||||| |||||||| Sbjct 253237 GCCGGTGAGTGTCTTGACAAAAATCTGCAT 253266 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| || || || ||| ||||| || ||||| || ||| Sbjct 252128 CCACCACGAAGACGAAGGACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAG 252187 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | ||||||||||| ||||| | ||||||||| ||| | || Sbjct 252188 AGCGTGCGACCATCCTCAAGCTGTTTTCCGGCGAAAATAAGACGCTGCTGGTCTGGAGGA 252247 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| ||||| ||| ||||| || || | ||| | ||||||| || || || Sbjct 252248 ATACCTTCCTTGTCCTGAATCTTCTGCTT-GACGTTGTCGATGGTGTCGGAAGACTCAAC 252306 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | || || || || ||||||||| Sbjct 252307 TTCCAAAGTGATTGTCTTGCCAGTGAGTGTCTTGACGAAAATCTGCATA 252355 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || || || ||| ||||| || ||||| || ||||| || || | || || Sbjct 252374 ACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTACGACCATCTTCA 252433 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||||||||| || || | |||||||| ||| | || | |||||| ||||| | Sbjct 252434 AGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGA 252493 Query 33661 ATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTA 33720 || ||||| || | || | ||||||| || || || || | ||||| |||||| Sbjct 252494 ATCTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCAACTTCCAAAGTGATAGTTTTA 252553 Query 33721 CCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || ||||| || || || || ||||||||| Sbjct 252554 CCGGTTAAAGTCTTGACGAAAATCTGCATA 252583 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || || || ||| ||||| || ||||| || ||||| || || | || || Sbjct 252830 ACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTACGACCATCTTCA 252889 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||||||||| || || | |||||||| ||| | || | |||||| ||||| | Sbjct 252890 AGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGA 252949 Query 33661 ATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTA 33720 || ||||| || | || | ||||||| || || || || | ||||| |||||| Sbjct 252950 ATCTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCAACTTCCAAAGTGATAGTTTTA 253009 Query 33721 CCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || ||||| || || || || ||||||||| Sbjct 253010 CCGGTTAAAGTCTTGACGAAAATCTGCATA 253039 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || || || || || ||||| ||||| | || || | ||||||||||| ||| Sbjct 252620 TCCTTCTGAATATTATAGTCAGAGAGCGTGCGGCCATCCTCAAGCTGTTTTCCGGCGAAA 252679 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || | ||||||||| ||| | || | |||||| ||||| ||| ||||| || || | Sbjct 252680 ATAAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGAATCTTCTGCTT-GACGTT 252738 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| | ||||||| || || || || | ||||| || || || || | || || || Sbjct 252739 GTCGATGGTGTCGGAAGACTCAACTTCCAAAGTGATTGTCTTGCCAGTGAGTGTCTTGAC 252798 Query 33738 AAAGATCTGCATA 33750 || ||||||||| Sbjct 252799 GAAAATCTGCATA 252811 >seq84 Length=1068272 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | || | |||||| || |||||| ||| || || |||||||||||||| Sbjct 721355 ACCACCACGGAGGCGCAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGA 721296 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || | || ||||| || || ||||| ||||| | |||||||| ||| | || Sbjct 721295 GAGGGTACGGCCATCTTCCAACTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCTGGAGG 721236 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCAC 33701 | ||||| || || ||| ||||| || | || | ||||| || || || Sbjct 721235 AATGCCTTCCTTATCTTGAATCTTCTGCTTGACGTTATCGATCGTGTCAGAGGACTCGAC 721176 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| ||||| || || || || || || || || || ||||||||| Sbjct 721175 CTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCATA 721127 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || |||||||| || || ||| || || ||||| || || || Sbjct 720899 ACCACCACGGAGACGCAAGACCAAATGAAGGGTAGACTCCTTCTGGATGTTATAGTCAGA 720840 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || | || || | || || |||||||| || | ||||||||| ||| | || Sbjct 720839 GAGAGTACGGCCATCCTCAAGCTGCTTACCGGCAAAGATGAGACGCTGCTGGTCTGGGGG 720780 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||| || ||||| || ||||| || | | | |||| ||||||| || || | Sbjct 720779 AATACCCTCCTTGTCTTGGATCTTCTGCTTGA-CGTTGTCAATGGTGTCGGAGGACTCGA 720721 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| || || || || | || || || ||||||||||| Sbjct 720720 CCTCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTAACGAAGATCTGCAT 720672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703447160960