Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq84 111 4e-19 seq53 111 4e-19 >seq84 Length=1068272 Score = 111 bits (122), Expect = 4e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || ||||| | || || || |||||| Sbjct 721131 CAGATTTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCTGAC 721190 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||||| ||||||||||| || ||||| ||| || ||| || Sbjct 721191 ACGATCGATAACGTCAAGCAGAAGATTCAAGATAAGGAAGGCATTCCTCCAGACCAGCAG 721250 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || |||||||| ||||||||||||||||| | || | ||||||||||| || Sbjct 721251 CGCCTCATTTTCGCCGGCAAGCAGTTGGAAGATGGCCGTACCCTCTCCGATTACAACATC 721310 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||| ||||| ||| Sbjct 721311 CAGAAGGAGTCCACTCTCCAC 721331 >seq53 Length=681236 Score = 111 bits (122), Expect = 4e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || |||||||||||||| || ||| ||| Sbjct 252351 CAGATTTTCGTCAAGACACTCACTGGCAAGACAATCACTTTGGAAGTTGAGTCTTCCGAC 252292 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||||| |||||||| || || ||||| ||| || ||| || Sbjct 252291 ACCATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAAGGTATTCCTCCAGACCAGCAG 252232 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||| ||||||||||| ||| | || ||||| | || | | || ||||| || Sbjct 252231 CGTCTTATTTTCGCCGGAAAACAGCTTGAGGATGGTCGCACGCTCTCTGACTACAATATC 252172 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 || || |||||||| |||||| Sbjct 252171 CAAAAGGAGTCTACCCTTCAC 252151 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || ||||| |||||||||||||| || || ||| Sbjct 252579 CAGATTTTCGTCAAGACTTTAACCGGTAAAACTATCACTTTGGAAGTTGAGTCCTCCGAC 252520 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||||| |||||||| || || ||||| ||| || ||| || Sbjct 252519 ACCATCGATAACGTCAAGCAGAAGATTCAGGACAAGGAAGGTATTCCCCCAGACCAGCAG 252460 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||||||||| ||| | |||||||| | || | | || ||||| || Sbjct 252459 CGCCTCATCTTCGCCGGAAAACAGCTTGAAGATGGTCGTACGCTCTCTGACTACAATATC 252400 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 || || |||||||| |||||| Sbjct 252399 CAAAAGGAGTCTACCCTTCAC 252379 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || ||||| |||||||||||||| || || ||| Sbjct 253035 CAGATTTTCGTCAAGACTTTAACCGGTAAAACTATCACTTTGGAAGTTGAGTCCTCCGAC 252976 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||||| |||||||| || || ||||| ||| || ||| || Sbjct 252975 ACCATCGATAACGTCAAGCAGAAGATTCAGGACAAGGAAGGTATTCCCCCAGACCAGCAG 252916 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||||||||| ||| | |||||||| | || | | || ||||| || Sbjct 252915 CGCCTCATCTTCGCCGGAAAACAGCTTGAAGATGGTCGTACGCTCTCTGACTACAATATC 252856 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 || || |||||||| |||||| Sbjct 252855 CAAAAGGAGTCTACCCTTCAC 252835 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || |||||||||||||| || ||| ||| Sbjct 252807 CAGATTTTCGTCAAGACACTCACTGGCAAGACAATCACTTTGGAAGTTGAGTCTTCCGAC 252748 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||||| |||||||| || || ||||| ||| || ||| || Sbjct 252747 ACCATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAAGGTATTCCTCCAGACCAGCAG 252688 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||| ||||||||||| ||| | || ||||| | || | | || || || | Sbjct 252687 CGTCTTATTTTCGCCGGAAAACAGCTTGAGGATGGCCGCACGCTCTCTGACTATAATATT 252628 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || || || || ||||| ||| | | ||||| Sbjct 252627 CAGAAGGAATCCACCCTCCACCTAGTTCTTCGTCTTCG 252590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181818710393098