Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq57 111 1e-19 seq53 98.7 9e-16 seq84 96.9 3e-15 >seq57 Length=574579 Score = 111 bits (122), Expect = 1e-19 Identities = 334/512 (65%), Gaps = 19/512 (4%) Strand=Plus/Plus Query 46758 GTGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCC 46817 || || ||| ||||||| ||||| ||||||||||||||||| | || ||| Sbjct 520855 GTTCCTTGCATTCGCAAGAAGGCTGCCTGGGCCATGAAGTGGATTTCTGACCAGGACGCA 520914 Query 46818 ACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGT 46877 || | || || || |||| || || || || |||||| | || || || ||| Sbjct 520915 ACCTTTGCTGAACGTTTGGTCGCCTTTGCTGCTGTTGAAGGCATCTTCTTCTCTGGCGCA 520974 Query 46878 TTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAAC 46937 || || |||| |||| | |||| || | ||||| || ||||| ||| ||| Sbjct 520975 TTCGCTTCCATCTTTTGGCTCAAAAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAAC 521034 Query 46938 GAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTG--------TCTCTATT 46989 || | |||||||| || || || || ||||| || || || || |||| | Sbjct 521035 GAACTCATCTCGCGTGATGAGGGTCTCCACACTGATTTCGCCTGCTTATTGTTCTCATTG 521094 Query 46990 ACAAGACGCGCGTGAATGAGAAATTAAACTCGGACACGATCCTGAGCATGTTTAGGGAGG 47049 ||| | ||| ||| || |||| | | || || || ||| |||| Sbjct 521095 TTGAGAT-CTCGTCC-TGACCAA--AAACGTGT---CAATGCT----ATCATTACAGAGG 521143 Query 47050 CGGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGA 47109 | || |||||| | ||||| || || | || || || || ||| | || |||| Sbjct 521144 CTGTTGTGATCGAACAAGAGTTCTTGACCGATGCTCTCCCTGTGATGTTGATTGGTATGA 521203 Query 47110 ACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCG 47169 | || ||| ||| |||| |||||||||||||| |||||||| ||||| ||||| Sbjct 521204 ATGCCAAGTTGATGAAACAATACATTGAGTTTGTGGCCGATCGTCTCTTGGTCGCGCTCG 521263 Query 47170 GACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCG 47229 || | || ||| ||| |||| | ||||| ||||| |||||| || || || || Sbjct 521264 GAAACCCAAAACATTACAATGTTGAGAATCCTTTTGACTTTATGGACTTGATCTCTCTTC 521323 Query 47230 AGGGCAAAACCAATTTTTTCGAGAAACGAGTC 47261 ||||||| ||||| || || ||||| || ||| Sbjct 521324 AGGGCAAGACCAACTTCTTTGAGAAGCGTGTC 521355 >seq53 Length=681236 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| ||||| || |||||||| | ||||| |||||| Sbjct 252374 ACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTACGACCATCTTCA 252433 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 |||||||| |||| |||| || ||||| || ||||| || || ||||| || || | Sbjct 252434 AGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGA 252493 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || || || | | || | || |||| | ||| ||||| | || | |||||| Sbjct 252494 ATCTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCAACTTCCAAAGTGATAGTTTTA 252553 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || | ||| || | |||||||||||| Sbjct 252554 CCGGTTAAAGTCTTGACGAAAATCTGCAT 252582 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| ||||| || |||||||| | ||||| |||||| Sbjct 252830 ACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTACGACCATCTTCA 252889 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 |||||||| |||| |||| || ||||| || ||||| || || ||||| || || | Sbjct 252890 AGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGA 252949 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || || || | | || | || |||| | ||| ||||| | || | |||||| Sbjct 252950 ATCTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCAACTTCCAAAGTGATAGTTTTA 253009 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || | ||| || | |||||||||||| Sbjct 253010 CCGGTTAAAGTCTTGACGAAAATCTGCAT 253038 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| ||||| || |||||||| | || || ||| || Sbjct 252146 ACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTGCGACCATCCTCA 252205 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 |||||||| |||| | || |||||||| || |||||||| || ||||| || || | Sbjct 252206 AGCTGTTTTCCGGCGAAAATAAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGA 252265 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || || || | | || | || |||| | ||| ||||| | || | || || Sbjct 252266 ATCTTCTGCTTGACGTTGTCGATGGTGTCGGAAGACTCAACTTCCAAAGTGATTGTCTTG 252325 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || || | |||||||||||| Sbjct 252326 CCAGTGAGTGTCTTGACGAAAATCTGCAT 252354 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| |||||||| || || ||| | ||||| |||||| Sbjct 253058 ACCAAGTGAAGGGTCGACTCCTTTTGAATATTATAATCGGAAAGCGTACGTCCATCTTCA 253117 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || || || || | | |||| |||||||| || |||||||| || ||||| || || Sbjct 253118 AGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGG 253177 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||||| | | || | ||| |||| | ||| || || | || | || || Sbjct 253178 ATTTTCTGTTTAACATTGTCGATAGTGTCGGAGGACTCTACCTCCAAAGTAATGGTCTTG 253237 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || || | ||||||||||| Sbjct 253238 CCGGTGAGTGTCTTGACAAAAATCTGCAT 253266 >seq84 Length=1068272 Score = 96.9 bits (106), Expect = 3e-15 Identities = 159/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | | ||||| || || ||||| ||||| | ||||| | Sbjct 720886 CGCAAGACCAAATGAAGGGTAGACTCCTTCTGGATGTTATAGTCAGAGAGAGTACGGCCA 720827 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| ||||||| | |||| |||||||| || ||||| || || || || || Sbjct 720826 TCCTCAAGCTGCTTACCGGCAAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTTG 720767 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || || | | || | || |||| | ||| || || | || | Sbjct 720766 TCTTGGATCTTCTGCTTGACGTTGTCAATGGTGTCGGAGGACTCGACCTCAAGGGTGATG 720707 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACTTATTAGATT 132136 || || || || ||||| || | ||| |||||||||||| ||| |||| Sbjct 720706 GTCTTGCCGGTGAGAGTCTTAACGAAGATCTGCATGACTAATT-GATT 720660 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | ||||| || || ||||| ||||| | |||||| | Sbjct 721114 CGCAAGACCAAATGAAGAGTAGACTCCTTCTGGATGTTATAGTCAGAAAGGGTACGGCCA 721055 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || |||| | |||| |||||||| || ||||| || || || ||||| Sbjct 721054 TCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCTTTG 720995 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || || | | || | ||||| | | ||| || |||| || | Sbjct 720994 TCTTGGATCTTCTGCTTGACATTGTCAATGGTATCAGAGGACTCGACCTCGAGGGTGATG 720935 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || |||| || || | |||||||||||| Sbjct 720934 GTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 720900 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||||| ||||| || | | ||||| || || |||||||| ||| | ||| Sbjct 721349 ACGGAGGCGCAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGT 721290 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| |||||| | ||| || |||| | || || ||||| || |||||||| ||||| Sbjct 721289 ACGGCCATCTTCCAACTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCTGGAGGAATGCC 721230 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| ||||| ||| || || || | | || | || || | | ||| || || | Sbjct 721229 TTCCTTATCTTGAATCTTCTGCTTGACGTTATCGATCGTGTCAGAGGACTCGACCTCAAG 721170 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || |||| || || | |||||||||||| Sbjct 721169 GGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 721128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610377845680