Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq84 111 1e-19 seq53 96.9 3e-15 seq62 84.2 2e-11 >seq84 Length=1068272 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| |||||||| | ||| |||||| || ||||| || || | Sbjct 720898 CCACCACGGAGACGCAAGACCAAATGAAGGGTAGACTCCTTCTGGATGTTATAGTCAGAG 720839 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || ||||||||||| ||||| || | ||||||||||| | ||| Sbjct 720838 AGAGTACGGCCATCCTCAAGCTGCTTACCGGCAAAGATGAGACGCTGCTGGTCTGGGGGA 720779 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | ||||||||| |||||| ||||| | |||| | | |||||| || || || Sbjct 720778 ATACCCTCCTTGTCTTGGATCTTCTGCTTGA-CGTTGTCAATGGTGTCGGAGGACTCGAC 720720 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | ||||| || || || || | ||| || || || |||||||| Sbjct 720719 CTCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTAACGAAGATCTGCAT 720672 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || |||||| || | || |||||| || ||||||||||||| Sbjct 721354 CCACCACGGAGGCGCAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAG 721295 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || |||| |||||| || || || || | ||||||||||| | |||| Sbjct 721294 AGGGTACGGCCATCTTCCAACTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCTGGAGGA 721235 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||| || ||||| ||||| | | | | |||||| || || ||| Sbjct 721234 ATGCCTTCCTTATCTTGAATCTTCTGCTTGACGTTATCGATCGTGTCAGAGGACTCGACC 721175 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || || ||||| || || || || |||||||| Sbjct 721174 TCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 721128 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| |||||||| | ||| |||||| || ||||| || || | Sbjct 721126 CCACCACGGAGACGCAAGACCAAATGAAGAGTAGACTCCTTCTGGATGTTATAGTCAGAA 721067 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || || |||||||| || ||||| || | ||||||||||| | ||| Sbjct 721066 AGGGTACGGCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGA 721007 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||| ||||| |||||| ||||| | | | | | || || || || ||| Sbjct 721006 ATACCCTCTTTGTCTTGGATCTTCTGCTTGACATTGTCAATGGTATCAGAGGACTCGACC 720947 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || || ||||| || || || || |||||||| Sbjct 720946 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 720900 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | ||| |||||||| | || |||||| |||||||| || || | Sbjct 721582 CCACCGCGAAGGCGCAATACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCAGAA 721523 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || || |||||||| || ||||| || | ||||||||||| | ||| Sbjct 721522 AGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAAATGAGGCGCTGCTGGTCTGGGGGA 721463 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||| || |||||| ||||| | | | | | || || ||||| ||| Sbjct 721462 ATACCCTCCTTATCTTGGATCTTCTGCTTGACATTGTCAATGGTATCAGAGGATTCGACC 721403 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || || ||||| || || || || |||||||| Sbjct 721402 TCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 721356 >seq53 Length=681236 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||| || ||||||| | || || | || || || ||||| || ||||| Sbjct 253075 CTCCTTTTGAATATTATAATCGGAAAGCGTACGTCCATCTTCAAGTTGCTTTCCAGCAAA 253134 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | ||||| | ||||||||| ||| || || || | | | Sbjct 253135 GATGAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATTTTCTGTTTAACATT 253194 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| || || ||||||| || || || || || || | || || || Sbjct 253195 GTCGATAGTGTCGGAGGACTCTACCTCCAAAGTAATGGTCTTGCCGGTGAGTGTCTTGAC 253254 Query 35725 AAATATCTGCATT 35737 ||| ||||||||| Sbjct 253255 AAAAATCTGCATT 253267 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || | ||| ||||||||| || ||||| || | | || || | || || Sbjct 252374 ACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTACGACCATCTTCA 252433 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 ||||| || || || || || | ||||||||||| | |||| | ||||||||| Sbjct 252434 AGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGA 252493 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 ||||| ||||| | | | | |||||| || || || |||| ||||| |||||| Sbjct 252494 ATCTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCAACTTCCAAAGTGATAGTTTTA 252553 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || ||||| || || || |||||||| Sbjct 252554 CCGGTTAAAGTCTTGACGAAAATCTGCAT 252582 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || | ||| ||||||||| || ||||| || | | || || | || || Sbjct 252830 ACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTACGACCATCTTCA 252889 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 ||||| || || || || || | ||||||||||| | |||| | ||||||||| Sbjct 252890 AGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGA 252949 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 ||||| ||||| | | | | |||||| || || || |||| ||||| |||||| Sbjct 252950 ATCTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCAACTTCCAAAGTGATAGTTTTA 253009 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || ||||| || || || |||||||| Sbjct 253010 CCGGTTAAAGTCTTGACGAAAATCTGCAT 253038 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||| || | ||| ||||||||| || ||||| || | Sbjct 252128 CCACCACGAAGACGAAGGACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAG 252187 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || ||||| || || || || || | ||||||||||| | |||| Sbjct 252188 AGCGTGCGACCATCCTCAAGCTGTTTTCCGGCGAAAATAAGACGCTGCTGGTCTGGAGGA 252247 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | ||||||||| ||||| ||||| | |||| | | |||||| || || || Sbjct 252248 ATACCTTCCTTGTCCTGAATCTTCTGCTTGA-CGTTGTCGATGGTGTCGGAAGACTCAAC 252306 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || || | || || || || |||||||| Sbjct 252307 TTCCAAAGTGATTGTCTTGCCAGTGAGTGTCTTGACGAAAATCTGCAT 252354 >seq62 Length=1732855 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||| || || || |||||| ||||||||||| |||| | Sbjct 1320870 CCACCACGAAGACGAAGAACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAGTCGGAC 1320929 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || |||||||| || ||||| ||||| ||||||||||| | ||| Sbjct 1320930 AAAGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAAATCAAACGCTGCTGGTCTGGGGGA 1320989 Query 35630 A 35630 | Sbjct 1320990 A 1320990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450792822381040