Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq53 122 9e-23 seq62 86.0 6e-12 >seq53 Length=681236 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || | ||| || || || |||||||| || |||||||| Sbjct 252356 CCGCCGCGGAGACGAAGGACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAG 252415 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || || |||||||| || || || || | |||||||| || || || Sbjct 252416 AGCGTACGACCATCTTCAAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGA 252475 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || ||||| || || ||||| || | |||||||| || || || Sbjct 252476 ATACCTTCCTTGTCCTGAATCTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCAACT 252535 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||| || ||||||||||||||||| || |||||||| ||||| Sbjct 252536 TCCAAAGTGATAGTTTTACCGGTTAAAGTCTTGACGAAAATCTGCAT 252582 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || | ||| || || || |||||||| || |||||||| Sbjct 252812 CCGCCGCGGAGACGAAGGACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAG 252871 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || || |||||||| || || || || | |||||||| || || || Sbjct 252872 AGCGTACGACCATCTTCAAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGA 252931 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || ||||| || || ||||| || | |||||||| || || || Sbjct 252932 ATACCTTCCTTGTCCTGAATCTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCAACT 252991 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||| || ||||||||||||||||| || |||||||| ||||| Sbjct 252992 TCCAAAGTGATAGTTTTACCGGTTAAAGTCTTGACGAAAATCTGCAT 253038 Score = 120 bits (132), Expect = 3e-22 Identities = 174/245 (71%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | || | ||| || || || ||||||||||| || || ||| | Sbjct 253040 CCTCCACGGAGACGGAGGACCAAGTGAAGGGTCGACTCCTTTTGAATATTATAATCGGAA 253099 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || || || || || ||||| || | ||||||||| || || || Sbjct 253100 AGCGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGA 253159 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || ||||| ||||| || ||| | |||||||| || || || Sbjct 253160 ATACCTTCCTTGTCCTGGATTTTCTGTTTAACATTGTCGATAGTGTCGGAGGACTCTACC 253219 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGT---TTTTG 134723 || | ||||||||| || ||||| | || || || ||||| |||||||| | ||||| Sbjct 253220 TCCAAAGTAATGGTCTTGCCGGTGAGTGTCTTGACAAAAATCTGCATTTTATGTATTTTG 253279 Query 134724 TTCAA 134728 || || Sbjct 253280 TTTAA 253284 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || ||||||||||| ||||| || ||||| | ||| | || || Sbjct 252602 ACTAGGTGGAGGGTGGATTCCTTCTGAATATTATAGTCAGAGAGCGTGCGGCCATCCTCA 252661 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 |||||||| || || ||||| | ||||||||| || || || || ||||| || || ||| Sbjct 252662 AGCTGTTTTCCGGCGAAAATAAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGA 252721 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || ||||| ||| | |||||||| || || || || | ||| || || || Sbjct 252722 ATCTTCTGCTTGACGTTGTCGATGGTGTCGGAAGACTCAACTTCCAAAGTGATTGTCTTG 252781 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || || |||||||| ||||| Sbjct 252782 CCAGTGAGTGTCTTGACGAAAATCTGCAT 252810 >seq62 Length=1732855 Score = 86.0 bits (94), Expect = 6e-12 Identities = 93/122 (76%), Gaps = 5/122 (4%) Strand=Plus/Plus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 || || ||||| ||||||||||||||| | ||| || || |||||||| ||||| Sbjct 1320900 GTCGACTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGACCATCCTCGAGCTGCTTGCCG 1320959 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT---TTTTCTTGAATTTTTTGT 134633 |||||||||||||||||||| || || || || ||| | |||| ||| || ||||| Sbjct 1320960 GCAAAAATCAAACGCTGCTGGTCTGGGGGAATACCTGTTATGTTTTTTTG--TTGTTTGT 1321017 Query 134634 TT 134635 || Sbjct 1321018 TT 1321019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505397528187760