Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq47 277 2e-69 seq49 221 2e-52 seq57 141 1e-28 >seq47 Length=818200 Score = 277 bits (306), Expect = 2e-69 Identities = 1116/1742 (64%), Gaps = 23/1742 (1%) Strand=Plus/Minus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 || ||| ||| || ||||| ||||| || || |||| || | ||||||| || || Sbjct 306368 GCCGGTCGTGTTCGAAGATAATACATCCCCGTCTTCAACCCCCGCTTCCATCCATAAAAC 306309 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 ||| || | || |||| | ||| || ||||| ||||||||||||||| | Sbjct 306308 GCCATCGACGTCAACTTTCCATAATTCACATCCGCCATATGGATATTCATCGATTGAGAT 306249 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574 ||||| || || || || | || || ||||| | || | |||||| | ||| ||| Sbjct 306248 TGATCAATAAATGCCCCCCGGTCCGCTGCCATATCAATTACCACCTTTTGTGAAATCTCC 306189 Query 68575 CAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGGCTCGT-AT--TTTGAATGGAT 68631 || | ||||| | | | || | |||||| |||| |||| || | ||||| ||| Sbjct 306188 CACGTGGTCTTGTACAGCGCCTTCAAATCATCCGGAATACTCGGGATCCTCTGAATCGAT 306129 Query 68632 CCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAA 68691 || || | || || ||||| | | ||| ||||||| | ||||| || Sbjct 306128 CCGTTCTCTGCAATGATCCGGTTCTTCAGTTGATCGTTCCACAGTCCCATCTCCACCAAG 306069 Query 68692 ACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAA 68751 | | | | |||||| || || || || || || | | ||||| ||| ||||| Sbjct 306068 TCCTTCAACATCCACGGATTCACAATCTGGAACTCTCCCGCAAGCACTCGACGTGTGTAG 306009 Query 68752 ATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCA 68811 |||||| |||||| || || | | ||||||| ||||| || || | || || || Sbjct 306008 ATATTAGAGGTATAGGGCTCGAAACATTCATTGAAACCCAGGATCTGTGAGGTCGAAGCC 305949 Query 68812 GTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATG-TGTTATGATTTTATCTTT 68870 || ||||| ||||||||||| | || | | ||||| || | |||| | | Sbjct 305948 GTAGGCATCGGTGCCACCAAGAGTGAGTTGCGCACTCCATGCTGCT-TGATACTGGCCCG 305890 Query 68871 TAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAAT 68930 || | ||| ||||| ||||| || || || ||| | || ||| | || Sbjct 305889 GAGCGTATCCCAGTCCCAGAGATCGGAGGGCGTTACCCCCCACATGTCCGGTTGCAAGAT 305830 Query 68931 TCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTC 68990 ||| || | ||| || | ||| || ||||||| || |||| | ||| | || Sbjct 305829 TCCCTTCGAAACGGGTGAGCCCTCATAGGTCTCATAAGTACCCTCCTCCTGAGCCATCTC 305770 Query 68991 ACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTG 69050 ||| || || || || | | ||| || || |||||||||| ||| || | | | Sbjct 305769 ACAGGATGATTCCAAAGCCGCATGATAGATGGTCTCGAAAATCTGCTTGTTCAACTGACG 305710 Query 69051 TGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAAC 69110 ||| || | || || || | | || |||||||| || | ||||| || Sbjct 305709 TGCCTCGGGTGAGTCAAAGGGCATGCGCATCTTGATGAATGCATCCGCTAGACCCTGGAC 305650 Query 69111 CCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATA 69170 || | ||| | ||| | ||| | ||| || || | || || ||||||| |||||| || Sbjct 305649 ACCCACACCCACAGGACGATGACGCTTGTTGGACCGCTCTGCCTCTGGAACAGGATAGTA 305590 Query 69171 ATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTT 69230 || ||| ||||| || || | || ||| || || || || | | || | Sbjct 305589 GTTCTGATCAATAATCTTGTTCAAGTTGCGGGTCACGACCTTGGTGACCTGGTGAAGCAT 305530 Query 69231 GAGAAAATCAAATCGTCCATCTATA-ACAAACATATTCAGTGCTACAGATGCTAGATTAC 69289 || ||| | |||| ||| | ||| | ||| || | | || | |||| Sbjct 305529 CTTGAAGTCATA-CGTCTGATTATTGATAAAAGTCGGCAGCGCAATACTGGCCAAGTTAC 305471 Query 69290 AAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATT 69349 | || ||||| || | | | | |||| | ||||||||||| | |||||| || | Sbjct 305470 AGACCGCTACTTCGTCTGGACTGCTGTATTCAACAATCTCTGTACACAAATTACTGCACT 305411 Query 69350 TGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAA 69409 |||| || || || || || ||||| || ||| || || ||||||||||| || Sbjct 305410 TGATCGTTCCAAGGTTCTGTTGATTCGATTTACGGTTGCAAGCATCCTTGTAAAGCATGT 305351 Query 69410 ACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTA 69469 | || ||||| || || |||| | || | ||||| | ||| | | || || | Sbjct 305350 AAGGCGTACCGGTCTCGGTCTGGGCCTCCAGAATAGCATACCAGAGTTTCTGGGCCTTGA 305291 Query 69470 TTACGGTCTTGTA---ACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCAT 69526 | ||||||| ||| ||| |||||| | ||| || |||||||| | Sbjct 305290 T---GGTCTTGCGGGCACGACCCTCACGCTCATATCGATGATAGAGTTCCTCGAATTCTT 305234 Query 69527 CTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCAT 69586 | ||||| ||||| | | |||||| || ||||| | || ||| || | | Sbjct 305233 CGCCCCACACATCTTGAAGTCCAGGTGCCTCCGCAGGACAGAACAGACTCCAGTCAGCGT 305174 Query 69587 CATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTG 69645 |||| | ||| |||| || ||||| || ||||| ||||| ||| || | ||| | Sbjct 305173 TTTCCTCGATACGTCTCATGAACAGATCAGGGATCCAGAGAGC-ATAGAACAAATCACGA 305115 Query 69646 GTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAA 69705 | | | || || ||||| || || || |||||| || || || | | ||| | | Sbjct 305114 GCACGGGTCTCCTCCTTTCCAGTGTTCTTGCGAAGATCCAGGAATTCAAAGACATCGGCA 305055 Query 69706 TGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATG 69765 ||||| ||||| ||||| || || | | | || || || || || || |||||||| | Sbjct 305054 TGCCAGGGTTCGAGATACATGGCAAAGGCACCAGGACGCTTGTTGCCGCCCTGATCAACA 304995 Query 69766 TATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTT 69825 || | || || || || ||||| | ||||| ||||| | ||||| || | || || Sbjct 304994 TAACGAGCCGTATTGTTGTAGACACGAAGCATAGGAATCAACCCATTGGAATATCCGTTC 304935 Query 69826 GTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCT 69885 ||||||| ||| || || || ||||| || |||| ||||| || ||||| Sbjct 304934 GTTCCAGCAATGTATGAACCCGACGCACGAATGTTGTGAATATTAAGACCAATGCCTCCA 304875 Query 69886 GCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCA 69945 || |||| ||||| | ||||| || | || ||||| |||||||| || |||| Sbjct 304874 GCGGTTTTCGAGATCATGGCACAGGTCTTGAGGGTATCATAGATACCCTCGATCGAATCA 304815 Query 69946 TCTATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAA 70004 || |||| || || |||||| || | ||||| ||| | | ||||| ||||| || Sbjct 304814 TCCTTCATCGTCAACAAGAAACAAGAT-GACATCTGAGGGCGAGGTGTTCCAGCATTGAA 304756 Query 70005 TAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGC 70064 | || || || || || ||||| |||||||||| | |||||| || |||||||| Sbjct 304755 GAGCGTGGGCGAAGCATGGGTGAAGTATTTTTCAGACATGTAATTGTAGGTCTCAATAGC 304696 Query 70065 TGATTCTA---TATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGG 70121 || | |||| | ||| || || | || |||||||||||||||||||||||| Sbjct 304695 CTTGTCCACATTATCTCC---ATGGATCCCGACCGAGACACGCATCAACATATGCTGAGG 304639 Query 70122 TC 70123 || Sbjct 304638 TC 304637 >seq49 Length=746914 Score = 221 bits (244), Expect = 2e-52 Identities = 609/916 (66%), Gaps = 22/916 (2%) Strand=Plus/Minus Query 69286 TTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTA 69345 ||||| || || ||||||| || | |||| || ||||||||||| ||||||||| Sbjct 373888 TTACAGACAGCGACCTCATCAGGGCTGCTGTATTCGATGATCTCTGTACAGAGATTACTA 373829 Query 69346 CATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGA 69405 || ||||||||||||| || || ||||| ||| ||||||||| || || ||||| Sbjct 373828 CACTTGATAGTCCCCAAGTTCTGTTGATTCGACTTGCGGTTACAGGCATCTTTATAAAGC 373769 Query 69406 ATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCA 69465 ||| | || || ||||| || | |||| || | || | ||| | | ||| Sbjct 373768 ATATAGGGCGTTCCAGTCTCTGTTTGAGCCTCCAGGATTGCGAACCACAGCTTCTGAGCC 373709 Query 69466 TTTATTACGGTCTTGTAACGCTTCTCTTTTTCATATTGT--GT-ATATAGCCGT--TCGA 69520 || || ||||| | || || || || | || || |||||| | || | Sbjct 373708 TTGAT---AGTCTTACGA-GCCCGTC-CTTCCAGCTCGTAGGTCATATAGAGTTTCTCAA 373654 Query 69521 ATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACA 69580 | || || ||||| ||||| | | ||||| ||| ||||| | | ||| || Sbjct 373653 ACTCTTCGCCCCAGACATCTTGTAGACCAGGCGCCTCAGCAGGACAAA--AGAGACTCCA 373596 Query 69581 CATCATCATCC---TTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGA 69637 ||| ||| | | || ||||||||| || || || || ||||| || | | || | Sbjct 373595 -ATCGCCATTCTGTTCAATTCGTTTCATGAACAGGTCAGGGATCCAGAGTCCCAGGAACA 373537 Query 69638 GATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAA 69697 |||| | | | | ||||| || |||||||| || ||| || | ||| || | | Sbjct 373536 AGTCTCGAGCACGAGTCTCTTCCTTGCCTGTATTCTTGCGAAGGTCCAAAAAATCAAACA 373477 Query 69698 TATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCT 69757 || | |||||| ||||| | ||| || || | | |||| || || || ||||| || | Sbjct 373476 CGTCCGCATGCCAAGGTTCCAAATACATGGCAAAGGCTCCTGGCCGCTTGTTTCCACCTT 373417 Query 69758 GATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATT 69817 |||||| ||||| || || || ||| | || |||| ||| || || | || ||||| | Sbjct 373416 GATCTACATATCTCGCGGTATTGTTAAATACCCTCAACATAGGGATCAATCCGTTAGAAT 373357 Query 69818 TACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTA 69877 |||||| || |||| |||||| ||| || || || ||| | | || || | Sbjct 373356 GACCATTCGTACCAGCAATATATGAACCTGAGGCTCGGATGTTATGGACATTAAGGCCAA 373297 Query 69878 TTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTA 69937 | || || || | || ||||| | |||||| || | || || || || || || | Sbjct 373296 TCCCACCAGCAGTCTTGGAGATCATGGCACAAGACTTGAGGGTATCGTAAATTCCTTCGA 373237 Query 69938 TGCTATCATCTATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCC 69996 | ||||| |||| || ||| || ||||| || ||||||||| | | || || Sbjct 373236 TCGAGTCATCCTTCATAGTCAAG-AGGAAACAACTTGACATTTGAGGCCTTGGGGTCCCA 373178 Query 69997 GCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGA-AAGCAGATTGTATGT 70055 |||||||| | | |||||||| || || || |||||||||| | | || || || || Sbjct 373177 GCATTAAACAGGATCGGAGATGCATGCGTAAAATATTTTTCAGACATGTAG-TTATAAGT 373119 Query 70056 TTCAATAGCTGATTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCAACATAT 70114 |||||| || || |||||| ||| ||| || || | || |||||||| | ||| | Sbjct 373118 TTCAATGGCCTTGTCGATATCCTCAC-CATGGATCCCAACAGCAACACGCATGAGCATTT 373060 Query 70115 GCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTT 70174 | ||||| | ||||| | || || || || | ||||||||| |||||| || | Sbjct 373059 GTTGAGGCCTCTCTACTATCTTGCCATCGATCTTGAGGAGGTATGATCGTTCCAGGGTCT 373000 Query 70175 TAAACCCAAAATAGTT 70190 |||| || || ||||| Sbjct 372999 TAAAGCCGAAGTAGTT 372984 >seq57 Length=574579 Score = 141 bits (156), Expect = 1e-28 Identities = 223/314 (71%), Gaps = 4/314 (1%) Strand=Plus/Minus Query 39451 ATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAAC 39510 ||| || ||||| || |||||| |||||||| | |||||| || || | | || Sbjct 521244 ATCGGCCACAAACTCAATGTATTGTTTCATCAACTTGGCATTCATACCAATCAACATCAC 521185 Query 39511 TGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCGATGT 39570 || ||||| || || | ||||||| |||||| | || |||||||| || || | | Sbjct 521184 AGGGAGAGCATCGGTCAAGAACTCTTGTTCGATCACAACAGCCTCTGTAATGATAGCATT 521125 Query 39571 TACTACCTCATCACTC-GGTGGATGCAATAAATGTTTA-AACATTAAGCAGGCGAAGTCA 39628 || || | | || || || | | || | | |||| |||||||||||| ||| Sbjct 521124 GAC-ACGTTTTTGGTCAGGACGA-GATCTCAACAATGAGAACAATAAGCAGGCGAAATCA 521067 Query 39629 CAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGA 39688 || || |||||||| | || | |||||| || || || || |||||||| ||| Sbjct 521066 GTGTGGAGACCCTCATCACGCGAGATGAGTTCGTTGGAGAAGGTCAGACCAGGCATGAGA 521007 Query 39689 CCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACT 39748 |||||||||||||||||||| |||| ||| || | ||||| |||||||||||||| || Sbjct 521006 CCACGCTTTTTGAGCCAAAAGATGGAAGCGAATGCGCCAGAGAAGAAGATGCCTTCAACA 520947 Query 39749 GCTGCAAATGCAAC 39762 || ||||| || || Sbjct 520946 GCAGCAAAGGCGAC 520933 Score = 138 bits (152), Expect = 2e-27 Identities = 205/290 (71%), Gaps = 3/290 (1%) Strand=Plus/Minus Query 39878 TCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCC 39937 ||||| ||||| || || || | ||| ||||| |||||||| | || |||||| Sbjct 520475 TCTTTGACATAGGTGTCAATGAGAAGAGAGTACATCTCTGAATGAACATTCTCAATCATG 520416 Query 39938 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCC 39997 || || || || ||||| ||||||||||||| || || ||||| | || | |||| Sbjct 520415 ATTTGGAAGCCATAAAAGCATCTTGCTTCAGGGATCTGGACCTCATTCGAGAAACGTTCC 520356 Query 39998 GCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATA 40057 | || |||||||| || ||||| ||||| ||||| || |||| | ||| || Sbjct 520355 AAGAGGTTCTCATTCACAATACCATCGCTAGCAGCAAAGAAGGCCAGGATGTGTGAAACG 520296 Query 40058 AAATATTTTTCATCGGGTGTCAA---TTTATTCCAGTCATTGATATCTTTTGATATATCT 40114 || || |||||| |||||| || | |||||||| || || || || | |||| Sbjct 520295 AAGAATCGTTCATCTTCTGTCAAACGGTTTTCCCAGTCATGCATGTCCTTGGAAAGATCT 520236 Query 40115 ACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCA 40164 ||||| ||||| ||||| || || || || ||||| |||||||| | ||| Sbjct 520235 ACTTCCTCAGCAGTCCAGAAGGATGCTTCAGCCTTCTTGTACATCTGCCA 520186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686907615082320