Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq47 154 2e-32 seq57 120 4e-22 seq1 104 3e-17 seq117 87.8 2e-12 >seq47 Length=818200 Score = 154 bits (170), Expect = 2e-32 Identities = 924/1464 (63%), Gaps = 43/1464 (3%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 |||||| || | || || || || || |||||||| ||||| ||| |||| ||| || Sbjct 306012 GTAGATATTAGAGGTATAGGGCTCGAAACATTCATTGAAACCCAGGATCTGTGAGGTCGA 305953 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || || ||||| ||||||| ||| || ||| || | || | || |||||| | | Sbjct 305952 AGCCGTAGGCATCGGTGCCACCAAGAGTGAGTTGCGCACTCCATGCTGCTTGATACTGGC 305893 Query 110827 CTTGAGAACATCCCAGTCGTAGTTGAGCTT--GGTTTCACCTTCCCACATGTCAAACTG- 110883 | ||| ||||||||| || || | || | ||| |||||||||| || Sbjct 305892 CCGGAGCGTATCCCAGTCCCAGA-GATCGGAGGGCGTTACCC-CCCACATGTCCGGTTGC 305835 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 ||| ||||| | | |||| || |||||| |||| ||||| | ||| | | | ||| Sbjct 305834 AAGATTCCCTTCGAAA-CGGGTGAGCCCTCATAGGTCTCATAAGTACCCTCCTCCTGAGC 305776 Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003 || |||||| | |||| | || ||||| ||||| || || || | |||| Sbjct 305775 CATCTCACAGGATGATTCCAAAGCCGCATGATAGATGGTCTCGAAAATCTGCTTGTTCAA 305716 Query 111004 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACC 111063 || || || ||| ||||| | ||| | || ||| ||||||| ||||| Sbjct 305715 CTGACGTGCCTCGGGTGAGTCAAAGGGCATGCGCATCTTGATGAATGCATCCGCTAGACC 305656 Query 111064 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC---AAC 111120 || ||||||| ||| | ||| | || ||| | || ||| ||| | | ||| ||| Sbjct 305655 CTGGACACCCACACCCACAGGACGATGACGCTTGTTGGAC---CGCTCTGCCTCTGGAAC 305599 Query 111121 GGGATAAAAATTTCTG-TCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 111179 ||||| | || ||| ||||| | ||| | || ||| || | ||| |||| | Sbjct 305598 AGGATAGTAGTT-CTGATCAATAATCTTGTTCAAGTTGCGGGTCACGACCTTGGTGACCT 305540 Query 111180 CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGA 111239 ||||| | | | ||| | || || | ||||| | | | || || || | Sbjct 305539 GGTGAAGCATCTTGAAGTCATACGTCTGATT------ATTGATAAAAGTCGGCAGCGCAA 305486 Query 111240 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTG-TGTACTCTAAAATTTCTGTA 111298 | ||||| || || || || || || | ||| |||| || | ||| |||||| Sbjct 305485 TACTGGCCAAGTTACAGACCGCTACTTCGTCTGGA-CTGCTGTATTCAACAATCTCTGTA 305427 Query 111299 CATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCA 111358 || || || | ||| ||||| || | |||| ||| || || |||||| ||| Sbjct 305426 CACAAATTACTGCACTTGATCGTTCCAAGGTTCTGTTGATTCGATTTACGGTTGCAAGCA 305367 Query 111359 TCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAA 111418 |||||||| |||||||| ||||| || ||||| ||||| | | |||||||| | ||| Sbjct 305366 TCCTTGTAAAGCATGTAAGGCGTACCGGTCTCGGTCTGGGCCTCCAGAATAGCATACCAG 305307 Query 111419 ACAT-CGGCGGCTGGTACAATGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGTG-T 111473 | | | | | || | |||| ||| || || ||||| ||| || | || | Sbjct 305306 AGTTTCTGGGCCTTG----ATGGTCTTGCGGGCACGACCCTCACGCTCATA-TCGATGAT 305252 Query 111474 AGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGA 111533 |||| | || || || || ||| | | || || || ||||||| | ||||||| Sbjct 305251 AGAGTTCCTCGAATTCTTCGCCCCACACATCTTGAAGTCCAGGTGCCTCCGCAGGACAGA 305192 Query 111534 AAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG 111593 | ||| ||| | | | |||||| | || ||||||| || || || ||||| || | Sbjct 305191 ACAGACTCCAGTCAGCGTTTTCCTCGATACGTCTCATGAACAGATCAGGGATCCAGAGAG 305132 Query 111594 ATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGA 111653 | || | ||| | | || | ||| || | || ||| || | || |||| Sbjct 305131 CATAGAACAAATCACGAGCACGGGTCTCCTCCTTTCCAGTGTTCTTGCGAAGATCCAGGA 305072 Query 111654 ACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC------CTT-T 111706 | || | || ||| || ||||| || || ||||| | || | | || ||| | Sbjct 305071 ATTCAAAGACATCGGCATGCCAGGGTTCGAGATACATGGCAAAGGCACCAGGACGCTTGT 305012 Query 111707 CGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATA 111766 | ||||| |||| ||||| || || || ||| | || |||||||| ||||| Sbjct 305011 TGCCGCCC----TGATCAACATAACGAGCCGTATTGTTGTAGACACGAAGCATAGGAATC 304956 Query 111767 ATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGG 111826 | |||| || | || || || || ||| || || | | | || Sbjct 304955 AACCCATTGGAATATCCGTTCGTTCCAGCAATGTATGAACCCGACGCACGAATGTTGTGA 304896 Query 111827 ATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCA 111886 || | | ||||| || ||||| || ||||| ||||| | | || || || Sbjct 304895 ATATTAAGACCAATGCCTCCAGCGGTTTTCGAGATCATGGCACAGGTCTTGAGGGTATCA 304836 Query 111887 TAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGT 111946 |||||||| | ||| || || ||||| | | | | ||| ||| |||||||| || Sbjct 304835 TAGATACCCTCGATCGAATCATCCTTCATCGTCAACAAGAAACAAGATGACATCTGAGGG 304776 Query 111947 CTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATC 112006 | ||||| |||||||||||||| || || | || || |||| || ||||| Sbjct 304775 CGAGGTGTTCCAGCATTGAAGAGCGTGGGCGAAGCATGGGTGAAGTATTTTTCAGACATG 304716 Query 112007 TTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGC 112066 | | ||| ||||| | | || | | || || ||||| |||| | ||| ||| Sbjct 304715 TAATTGTAGGTCTCAATAGCCTTGTCCACATTATCTCCATGGATCCCGACCGAGACACGC 304656 Query 112067 ATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTC 112126 || ||||| | ||| || | ||| | |||||| || ||| |||| || | Sbjct 304655 ATCAACATATGCTGAGGTCTCTCCGCAACCTTGCCATTGATCCGGAGAAGGTAAGAGCGC 304596 Query 112127 TCAAGGGTTTTGAGACCAAAGTAA 112150 ||||||||||||| ||||||||| Sbjct 304595 TCAAGGGTTTTGAATCCAAAGTAA 304572 >seq57 Length=574579 Score = 120 bits (132), Expect = 4e-22 Identities = 338/509 (66%), Gaps = 30/509 (6%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || ||| ||| ||||||||||||||||||||||| || | ||| || |||||| Sbjct 521363 TAATCCGAGACACGCTTCTCAAAGAAGTTGGTCTTGCCCTGAAGAGAGATCAAGTCCATA 521304 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA----TGGGTGGC--ACCCCAACTTGTTTGAGG 122484 |||||||| ||||||| | || || ||||| | | | | || | | Sbjct 521303 AAGTCAAAAGGATTCTCAACATTGTAATGTTTTGGGTTTCCGAGCGCGACC------AAG 521250 Query 122485 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGG 122544 |||||||| | |||| |||||||||| | |||| || | |||||||| || | Sbjct 521249 AGACGATCGGCCACAAACTCAATGTATTGTTTCATCAACTTGGCATTCATACCAATCAAC 521190 Query 122545 TT-ACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGAT 122603 | ||| ||||| || || | |||| ||| || ||| |||| |||||| | | ||| Sbjct 521189 ATCACA-GGGAGAGCATCGGTCAAGAACTCTTGTTCGATCACAACAGCCTCTGTAATGAT 521131 Query 122604 GGCGTGGATA-GTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAA-GAGCTCCAC---- 122657 || | || | |||| | |||| | ||| | || || ||| | | Sbjct 521130 AGCATTGACACGTTT------TTGGTC-AGGACGAGATCTCAACAATGAGAACAATAAGC 521078 Query 122658 -GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGAC 122716 ||| || || ||||||||||||||| || || || ||||| || |||||| |||| Sbjct 521077 AGGCGAAATCAGTGTGGAGACCCTCATCACGCGAGATGAGTTCGTTGGAGAAGGTCAGAC 521018 Query 122717 CTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGA 122776 | ||||||||||| ||||| || | |||| | || | ||||| || |||||||||| Sbjct 521017 CAGGCATGAGACCACGCTTTTTGAGCCAAAAGATGGAAGCGAATGCGCCAGAGAAGAAGA 520958 Query 122777 TACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG-AGCGAGACTTTGCATCA 122835 | || || ||| ||||| || | | ||||| || |||| ||| || || | Sbjct 520957 TGCCTTCAACAGCAGCAAAGGCGACCAAACGTTCAGCAAAGGTTGCG-TCCTGGTCAGAA 520899 Query 122836 AACCATTTCATTGCCCATTTCGCCTTCTT 122864 | ||| ||||| ||||| |||||||| Sbjct 520898 ATCCACTTCATGGCCCAGGCAGCCTTCTT 520870 >seq1 Length=1854208 Score = 104 bits (114), Expect = 3e-17 Identities = 219/322 (68%), Gaps = 16/322 (5%) Strand=Plus/Plus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 |||||||| ||||| || |||| |||||| ||| || | |||| | |||| | | Sbjct 338350 GCATCAATTTCATCTATAAAGATAATACAAGGTGCATGCTTCTTGGCGCTCGCAAACAAA 338409 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG-CA 11748 || ||||| | | ||| |||||||||||||||||||||||||| | || ||||| || Sbjct 338410 TCACGAACGCGTGAGGCTCCCACACCAACAAACATCTCCACAAATTCTGATCCAGAGACA 338469 Query 11749 CTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGT 11808 || | ||| || || || |||||| || | || || | ||||||||||| || Sbjct 338470 CT-CAAGAAGGGTACTCCTGCTTCACCTGCCGTCGCCTTTGCCAATAGGGTCTTTCCAGT 338528 Query 11809 ACCTGGCTTACCCGC-GAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATC 11867 || || | ||| | | || ||||| |||||||||||| ||| || | || Sbjct 338529 TCCAGG-TGGCCCACTCAAAATAGCGCCCTTGGGGATCTTGGC------TCCCAATTTTC 338581 Query 11868 T------CTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGT 11921 | || || | ||||||||| | |||| ||| || ||| | || ||| ||| Sbjct 338582 TGTAGGCTTCAGGATTCTTGAGAAATTTTACAAACTCCATAATCTCAACCTTAGCCTCGT 338641 Query 11922 CAATCCCCTCAACATCACTGAA 11943 | || || ||||||| |||| Sbjct 338642 CCATACCTGCAACATCCTTGAA 338663 >seq117 Length=942176 Score = 87.8 bits (96), Expect = 2e-12 Identities = 177/260 (68%), Gaps = 2/260 (1%) Strand=Plus/Minus Query 9285 AATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAATCA 9344 || ||||| ||| | ||| ||| ||| ||| ||| ||||| |||||||| || || Sbjct 192742 AACTACCGTGAGGCCTACAACATGTATGCTTGCAACGGTATCCTTTTCAACCACGAGTCT 192683 Query 9345 CCGAGACGAGGT-GCAGACTTTGTGACCATGAAGATTACCGAGGGTATCAAACAAATCAT 9403 || | || ||| ||| |||||||||| ||||| ||| | | || | ||||| Sbjct 192682 CCTCGCCGCGGTCGCAC-CTTTGTGACCCGTAAGATCACCTGCGCTGTCGCATCAATCAA 192624 Query 9404 GAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATTGGGGTCA 9463 | ||| || | |||| | | | | |||||| | ||||| || | || ||||| || Sbjct 192623 GTTGGGCAAACAAGAGTGCCTCTACCTCGGTAACTTGGACGCGAAGCGTGACTGGGGCCA 192564 Query 9464 CGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCCGACGAATA 9523 || || || || || | ||||||| ||||||||||| || | ||||| || | Sbjct 192563 TGCTCGCGATTACGTCGAGGGTATGTGGAGGATGCTTCAACAGGAAAAGGCCGAGGACTT 192504 Query 9524 TGTAGTAGCAACGGGTGAGA 9543 ||| | |||||||| |||| Sbjct 192503 TGTCCTGGCAACGGGAGAGA 192484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030916644800