Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq57 132 5e-26 seq49 93.3 5e-14 >seq57 Length=574579 Score = 132 bits (146), Expect = 5e-26 Identities = 142/183 (78%), Gaps = 5/183 (3%) Strand=Plus/Plus Query 59940 TGGGCCATGCAGTGGATGAGT--CCTGGA-GCATCATTTGCACAACGTCTCATAGCTTTT 59996 ||||||||| ||||||| | || ||| ||| | ||||| ||||| | | || ||| Sbjct 520882 TGGGCCATGAAGTGGATTTCTGACCAGGACGCAACCTTTGCTGAACGTTTGGTCGCCTTT 520941 Query 59997 GCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAA 60055 || ||| || ||||| ||||||||||||||| | ||| | | || || ||||||||||| Sbjct 520942 GC-TGCTGTTGAAGGCATCTTCTTCTCTGGCGCATTCGCTTCCATCTTTTGGCTCAAAAA 521000 Query 60056 GCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCT 60115 |||||| |||||||| || |||| ||||||||||| || || || || || ||||| || Sbjct 521001 GCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAACTCATCTCGCGTGATGAGGGTCT 521060 Query 60116 CCA 60118 ||| Sbjct 521061 CCA 521063 >seq49 Length=746914 Score = 93.3 bits (102), Expect = 5e-14 Identities = 442/697 (63%), Gaps = 33/697 (5%) Strand=Plus/Minus Query 78536 AGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGG 78595 ||||||||| || || ||||| ||| || ||||| |||| |||||||| || || | Sbjct 374439 AGATGTTGGAAGTATAAGGCTCAAAACATTCATTGTTACCCAAGATCTGGGATGTGGACG 374380 Query 78596 CGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCT 78655 | || |||||||| || || || | || ||||| | |||||| || || | | | Sbjct 374379 CTGTGGGCATGGGAGCTACAAGCAACGAGTTCCGGACGCCATGCTTCGAAATGTTGTCAC 374320 Query 78656 TTAGG------CCGTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGA 78709 ||| | |||||| | ||| | | | || |||||||||||| ||||| || | Sbjct 374319 GAAGGGTGTCCCAGTCCCAGAGATCAGTTGGAGTGACCCCCCACATGTCTGGTTGCAGAA 374260 Query 78710 TACCCTCGGACGCCGGCGACCCCTTGA-ACGTCTCGTAAGATCCCTCCTCCTTGGCGAGT 78768 |||||| ||| | || || |||| || | ||| |||| ||||| || | || || Sbjct 374259 TACCCTTAGACACTGGAGA-CCCTGGATAGGTCACGTAGACACCCTCTTCTTGAGCAAGC 374201 Query 78769 TCGCATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCG 78828 || || || | || || || || || | | ||| || || ||| | | | Sbjct 374200 TCACAAGATGCTTCGAGTGCAGCATGATAGATGGTCTCAAAAATCAAGACGTTCAATTTG 374141 Query 78829 CGCGCCTTGGTCTCGTCGAACGAAAGGCC--GAGCATCATG---AAGACATCGGCCAGGC 78883 || || || | ||| ||||| | | |||| || ||| | || || |||| Sbjct 374140 CGGGC----TTCAAG-CGAGTCAAAGGGCATGTGCATTTTGAAAAAGGCGTCTGCTAGGC 374086 Query 78884 CCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTCG 78943 ||||||| || | | || || || || || ||||| |||| |||| | | Sbjct 374085 CCTGGACTCCCAATCCAATTGGACGATGACGTTTGTTGGACTTTTCGGCCTCAGGAACTG 374026 Query 78944 GGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGT 79003 ||||| |||| | ||| || || |||||||| || || ||||| ||| | || || Sbjct 374025 GGTAATAGTTTCTATCAATAACCTTATTCAGGTTCCGAGTTACGACTTTAGTGATCTTGT 373966 Query 79004 ACAATTTGGCGAAATCAAA---ATGATTTCCTTTGATGAAAGTC--------GGTAGGCA 79052 | | ||||||||| || | || ||| |||| |||||| | Sbjct 373965 GGAGCATCTTGAAATCAAATACTGGAATGCCATTGTCACCAGTCATGACAAAGGTAGGAA 373906 Query 79053 CAGCGAT----GCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTT 79108 ||| || |||| ||| || || || ||| || ||||| |||||||| | Sbjct 373905 GAGCAATACTGGCCAAGTTACAGACAGCGACCTCATCAGGGCTGCTGTATTCGATGATCT 373846 Query 79109 CTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTAC 79168 |||| || | |||| ||||||| || || | ||||| || || ||| ||||| Sbjct 373845 CTGTACAGAGATTACTACACTTGATAGTCCCCAAGTTCTGTTGATTCGACTTGCGGTTAC 373786 Query 79169 AGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 |||| || || || ||| || ||||| || ||||| Sbjct 373785 AGGCATCTTTATAAAGCATATAGGGCGTTCCAGTCTC 373749 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 78184 GCGCGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGC 78243 || || ||||| | || ||||| || ||||| ||||||||||||||||| || | | Sbjct 374794 GCACGGGTTCGTAGGTAATACATCCCGGTCTTTAGACCCTTCTTCCATCCATAAAACGCC 374735 Query 78244 ATACTCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGG 78303 ||||| | |||||| | | | || | ||| ||||| ||||| || || || Sbjct 374734 ATACTTGTCAGCTTTCCGAAGTTTACGTCCGACATATGAATGTTTAGCGATTGAGATTGA 374675 Query 78304 TCGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAG 78363 ||||| || || || || || || |||||||| |||| |||||| | || ||||| Sbjct 374674 TCGATATAGGCCCCACGATCCGCTGCCATGTCAATGATGACCTTTTGAGAGATTTCCCAC 374615 Query 78364 ATGGTCCGGTAAATGGCCTT 78383 ||||| ||| | ||| || Sbjct 374614 GTGGTCTTGTACAAGGCTTT 374595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548523853794720