Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq117 141 1e-28 seq79 138 1e-27 seq47 129 6e-25 seq1 120 3e-22 seq49 100 3e-16 seq60 86.0 7e-12 seq57 84.2 2e-11 >seq117 Length=942176 Score = 141 bits (156), Expect = 1e-28 Identities = 244/350 (70%), Gaps = 11/350 (3%) Strand=Plus/Plus Query 158939 CAATAAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGG 158998 ||| |||||| |||| ||||| ||||||| || || | ||||||||||| | Sbjct 192460 CAACAAACTCACGGACAGTGTGCATCTCTCCCGTTGCCAGGACAAAGTCCTCGGCCTTTT 192519 Query 158999 GCTGTTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCT 159058 |||||| ||||| |||||| ||||||||||||| | || || |||||||| |||| Sbjct 192520 CCTGTTGAAGCATCCTCCACATACCCTCGACGTAATCGCGAGCATGGCCCCAGTCACGCT 192579 Query 159059 TGGCATCCATGTTCCCGAGCTCGATG-AC-----TTTTCCAGACTTTTTCCACTCAGCCA 159112 | || |||| ||| ||||| | || | || ||| || |||| | | || | Sbjct 192580 TCGCGTCCAAGTTACCGAGGTAGAGGCACTCTTGTTTGCCCAACTTGATTGA---TGCGA 192636 Query 159113 GACCGAGCGTGATCTTGCGCGTCACAAACTCTGC-TCCGCGCCGTTCCGACTCATGGTTA 159171 | || |||||||| || |||||||| ||| ||||| || ||||| ||||| Sbjct 192637 CAGCGCAGGTGATCTTACGGGTCACAAA-GGTGCGACCGCGGCGAGGAGACTCGTGGTTG 192695 Query 159172 AACAGAATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAG 159231 || || || ||| | ||||| ||| ||| |||| ||| ||||| || || |||||| Sbjct 192696 AAAAGGATACCGTTGCAAGCATACATGTTGTAGGCCTCACGGTAGTTGACTGTGATCCAG 192755 Query 159232 TATCCAAAGAGCTTGGAGACGCCGTATGGACTCCGAGGATAAAATGGTGT 159281 || || | | ||||| ||| || || ||| ||||||||||| || || Sbjct 192756 TAGGCATACATCTTGGCGACACCATAAGGAGAGCGAGGATAAAAGGGAGT 192805 Score = 102 bits (112), Expect = 9e-17 Identities = 239/357 (67%), Gaps = 9/357 (3%) Strand=Plus/Plus Query 124487 CTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAAT 124546 ||| | ||||||||||| ||||| |||| ||||| | | || || || |||| | Sbjct 192458 CTCAACAAACTCACGGACAGTGTGCATCTCTCCCGTTGCCAGGACAAAGTCCTCGGCCTT 192517 Query 124547 CGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCG 124606 ||| || | ||| |||||| | | |||||| || || || |||||||| || Sbjct 192518 TTCCTGTTGAAGCATCCTCCACATACCCTCGACGTAATCGCGAGCATGGCCCCAGTCACG 192577 Query 124607 CTTGGCATCCAGGTTTCCGAGCTCGAT------TGGCTTGGCCGTCTTGTTCCACTCCGC 124660 ||| || |||| ||| ||||| | || | | ||| || |||| | | | || Sbjct 192578 CTTCGCGTCCAAGTTACCGAGGTAGAGGCACTCTTGTTTGCCCAACTTGATTGA-TGCGA 192636 Query 124661 CAAACCCAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTT 124720 || | ||| || ||||| || |||||||| | |||||| || |||||||||||| Sbjct 192637 CAG-CGCAG-GTGATCTTACGGGTCACAAAGGTGCGACCGCGGCGAGGAGACTCGTGGTT 192694 Query 124721 GAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCA 124780 ||| || || || | || ||| |||| ||| | ||| |||||||| || ||||| Sbjct 192695 GAAAAGGATACCGTTGCAAGCATACATGTTGTAGGCCTCACGGTAGTTGACTGTGATCCA 192754 Query 124781 ATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTC 124837 || || | | ||||| || ||||| || || || || || || ||| |||| Sbjct 192755 GTAGGCATACATCTTGGCGACACCATAAGGAGAGCGAGGATAAAAGGGAGTGGTTTC 192811 >seq79 Length=364526 Score = 138 bits (152), Expect = 1e-27 Identities = 241/349 (69%), Gaps = 9/349 (3%) Strand=Plus/Minus Query 158939 CAATAAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGG 158998 ||| ||||||||||| ||||| ||||||| || || | ||||||||||| |||| Sbjct 32773 CAACAAACTCGCGGACAGTGTGCATCTCTCCTGTGGCCAGGACAAAGTCCTCAGGACTCT 32714 Query 158999 GCTGTTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCT 159058 ||| |||||||| |||||| |||| || ||||| | || |||||||| || |||| Sbjct 32713 CCTGCTGGAGCATTCTCCACATACCCTCAACATAATCGCGGGCATGACCCCAATCACGCT 32654 Query 159059 TGGCATCCATGTTCCCGAGCTCGATG-ACT-----TTTCCAGACTTTTTCCACTCAGCCA 159112 ||||||||| ||| ||||| | | | ||| || || |||| | | ||| | Sbjct 32653 TGGCATCCAAGTTTCCGAGGTAAAGGCACTCTTGCTTGCCCAACTTGATTGA---AGCGA 32597 Query 159113 GACCGAGCGTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAA 159172 | || ||||||||||| || || || || || || ||||| ||||| | Sbjct 32596 CAGCGCAGGTGATCTTGCGGGTGACGAAGGTACGGCCACGGCGGGGTGACTCGTGGTTGA 32537 Query 159173 ACAGAATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGT 159232 | || || ||| | ||||| ||| ||| |||| ||||||||| || ||| ||||||| Sbjct 32536 AGAGGATACCGTTGCAAGCATACATGTTGTAGGCCTCGCGGTAGTTGACAGTGATCCAGT 32477 Query 159233 ATCCAAAGAGCTTGGAGACGCCGTATGGACTCCGAGGATAAAATGGTGT 159281 | | | | ||||| || || || || |||||||| || || || Sbjct 32476 AGGCGTACAACTTGGCAACACCATAGGGTGAGCGAGGATAGAAAGGAGT 32428 >seq47 Length=818200 Score = 129 bits (142), Expect = 6e-25 Identities = 307/459 (67%), Gaps = 4/459 (1%) Strand=Plus/Plus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 |||||| ||| | | ||| |||| ||||| || || || |||| || || ||||| Sbjct 304701 TGAGACCTACAATTACATGTCTGAAAAATACTTCACCCATGCTTCGCCCACGCTCTTCAA 304760 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 ||||| || || |||||||||||| || ||| || || ||||||||||||| || Sbjct 304761 TGCTGGAACACCTCGCCCTCAGATGTCATCTTGTTTCTTGTTGACGATGAAGGATGATTC 304820 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 |||||| || ||||| || || |||||| |||||| ||||| || | || || Sbjct 304821 GATCGAGGGTATCTATGATACCCTCAAGACCTGTGCCATGATCTCGAAAACCGCTGGAGG 304880 Query 53422 TATCGGTATCCACTGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480 || ||| | | | || ||| | |||||| || || || || ||||||| Sbjct 304881 CATTGGTCT-TAATATTCACAACATTCGTGCGTCGGGTTCATACATTGCTGGAACGAACG 304939 Query 53481 GCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540 | || |||| | | |||||||| || |||| |||||| ||||| || || || Sbjct 304940 GATATTCCAATGGGTTGATTCCTATGCTTCGTGTCTACAACAATACGGCTCGTTATGTTG 304999 Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600 | ||||| || ||||| || | || ||||| || ||||| || ||||| |||| Sbjct 305000 ATCAGGGCGGCAACAAGCGTCCTGGTGCCTTTGCCATGTATCTCGAACCCTGGCATGCCG 305059 Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGT 53659 | | | || || || || || || ||| || | || |||| || ||| ||| Sbjct 305060 ATGTCTTTGAATTCCTGGATCTTCGCAAGAACACTGGAAAGGAGGAGACCCG-TGCTCGT 305118 Query 53660 GACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATG 53698 || |||| ||||| ||||| || || || |||||| Sbjct 305119 GATTTGTTCTATGCTCTCTGGATCCCTGATCTGTTCATG 305157 >seq1 Length=1854208 Score = 120 bits (132), Expect = 3e-22 Identities = 300/447 (67%), Gaps = 13/447 (3%) Strand=Plus/Plus Query 55482 TACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCA 55541 |||||||||| || || |||||||| ||||| || || || || ||||||| | |||| Sbjct 983420 TACGCAACTCACTACTGGTGGCGCCTATGCCTACAGCCTCAACCAGTCAGATCCTAGGCA 983479 Query 55542 ACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCT-AGCAGGT 55600 |||||||| || || || || || ||||||| |||| || || | ||| || Sbjct 983480 ACAACGAGTGCTTTGAACCTTATACATCCAACATTTACCAACGTCGAGTTATGAGC-GGC 983538 Query 55601 GAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAAC 55660 ||||| || | ||| | || || | || || ||| |||| | |||||| Sbjct 983539 GAGTTCCAGGTGGTGAACCATCATCTTTTGAACGATCTGACTCAGATGGGCTTATGGAAC 983598 Query 55661 CCGCAGATCAAGACGGATATTGT-GCGG--AACGGGGGGTCCGTCCAGAATCTG---GAG 55714 | ||| |||| | || | || | |||||| || ||||| |||| ||| Sbjct 983599 GAGGCGATGAAGAATCAAATCATTGCAGCTAACGGG---TCGATCCAGGGTCTGTCAGAG 983655 Query 55715 ATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTG 55774 | | | | ||| || | || |||| | |||||||||||||||||| || Sbjct 983656 CTAGATGATGATTTTAAGAAGTTGTATAGGACCATTTGGGAGATTCCACAGAAGGCATTG 983715 Query 55775 ATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTC 55834 | || ||| || ||||||| | | | || ||||| || ||||| ||||| |||| Sbjct 983716 TTGGAGATGGCAGCGGATCGTGCTCCATTTATTGACCAATCACAGTCATTGAACGTCTTT 983775 Query 55835 ATGGAGAATCCTTCA-CTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGG 55893 ||| |||| ||| | || || || | ||||||||||||| || ||||||||||| Sbjct 983776 ATGTCAGATCCATCATCCAGCAAAATT-ACGTCGATGCACTTTTTCGCATGGAAGAAGGG 983834 Query 55894 ACTCAAGACGGGTATGTACTATCTGCG 55920 | | ||||| || ||||||||||| || Sbjct 983835 ATTAAAGACAGGCATGTACTATCTCCG 983861 >seq49 Length=746914 Score = 100 bits (110), Expect = 3e-16 Identities = 167/240 (70%), Gaps = 6/240 (3%) Strand=Plus/Plus Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGA---CTAC 53230 |||| |||||| | | ||||||| || || | || ||||| ||||| || | || Sbjct 373047 GAGAGGCCTCAACAAATGCTCATGCGTGTTGCTGTTGGGATCCATGGTGAGGATATCGAC 373106 Query 53231 ACGCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCA 53290 | | | | ||| || || ||| ||| |||| || |||||||| || | || Sbjct 373107 AAG---GCCATTGAAACTTATAACTACATGTCTGAAAAATATTTTACGCATGCATCTCCG 373163 Query 53291 ACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATG 53350 | |||||| || ||||| || ||||| ||||| || || ||||| || | ||| Sbjct 373164 ATCCTGTTTAATGCTGGGACCCCAAGGCCTCAAATGTCAAGTTGTTTCCTCTTGACTATG 373223 Query 53351 AAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAG 53410 ||||||||||||||||| || || ||||| || |||||| |||||| ||||||||| Sbjct 373224 AAGGATGACTCGATCGAAGGAATTTACGATACCCTCAAGTCTTGTGCCATGATCTCCAAG 373283 >seq60 Length=531780 Score = 86.0 bits (94), Expect = 7e-12 Identities = 244/367 (66%), Gaps = 11/367 (3%) Strand=Plus/Plus Query 151863 GTAGCAGCTGAATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAAT 151922 |||| |||| |||| || || ||||||||||| || || || || | ||| || | | Sbjct 143217 GTAG-AGCTCCATCCTGTTCCAATGCCCTCTGCTCCATTAACAAGGACCATGGGGATCAC 143275 Query 151923 AGGGGCGTAAAACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGA 151982 ||| || |||| ||||| | | | ||| ||||| ||| ||| | || | || Sbjct 143276 AGGCATATACCACTCTGGCTCAATCCAATCACCATCATCGTTCAAGTAAGTTAAGAGGGG 143335 Query 151983 ATTGTCAGCCGGA---TCGAATATCCGTCGAGTCATAGGACTCAAACGC-GTGAAGATGT 152038 |||| | || | ||| || | || || || || | ||| |||||||| | Sbjct 143336 ---GTCATCATGAATGTGGAAGATACAGCGGGTAAT-GGCTGGGATCGCTGTGAAGATAT 143391 Query 152039 ATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCT 152098 | |||| ||||| ||||| ||||| ||| || | | ||||| || ||| ||| Sbjct 143392 AACGGGCACTGGCAGCATCTTTGCCTCCTTGCATTCTGCTACCAAATTGACCAACGGGTG 143451 Query 152099 CGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCT 152158 || ||||||| ||||||| ||| ||||||||||| || | ||||| || | | Sbjct 143452 AAAGTAGGTTGATGTTGTTGCTGCCTACGAAATTCTGTGCGAGGCCAACAATTGT-CATT 143510 Query 152159 G-CAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGC 152217 | || ||| |||||| |||||||| || | | ||| | | ||| || | || ||| Sbjct 143511 GTCAAACTTTGTTCACCATGGTGATATGCGGATTTCTCAGACACGTACCCAGACAGTTGC 143570 Query 152218 GCCACCT 152224 ||||||| Sbjct 143571 GCCACCT 143577 >seq57 Length=574579 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 74789 TTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACA 74848 ||| || || || | || |||||||| || |||||||| || | ||||||||||| | Sbjct 521037 TTCGTTGGAGAAGGTCAGACCAGGCATGAGACCACGCTTTTTGAGCCAAAAGATGGAAGC 520978 Query 74849 GAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 ||| | ||| ||||||||||||||| ||| ||||||||||| | |||| || || Sbjct 520977 GAATGCGCCAGAGAAGAAGATGCCTTCAACAGCAGCAAAGGCGACCAAACGTTCAGCAAA 520918 Query 74909 CGGTGCATC 74917 | ||| || Sbjct 520917 GGTTGCGTC 520909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215056052400