Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq84 123 2e-23 seq53 118 7e-22 >seq84 Length=1068272 Score = 123 bits (136), Expect = 2e-23 Identities = 161/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| |||||||| || || |||||| || |||||||| || || || || || Sbjct 720889 AGACGCAAGACCAAATGAAGGGTAGACTCCTTCTGGATGTTATAGTCAGAGAGAGTACGG 720830 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || ||||||||||| || | |||||| ||||| || || | |||||| Sbjct 720829 CCATCCTCAAGCTGCTTACCGGCAAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCC 720770 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||||| || || ||| | ||| ||||| | ||| || || | ||| Sbjct 720769 TTGTCTTGGATCTTCTG-CTTGACGTTGTCAATGGTGTCGGAGGACTCGACCTCAAGGGT 720711 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || ||||| | || || || || ||||||||| Sbjct 720710 GATGGTCTTGCCGGTGAGAGTCTTAACGAAGATCTGCATG 720671 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| |||||||| ||||| |||||| || |||||||| || ||||| || || Sbjct 721117 AGACGCAAGACCAAATGAAGAGTAGACTCCTTCTGGATGTTATAGTCAGAAAGGGTACGG 721058 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || |||||||| || | |||||| ||||| || || | ||||| Sbjct 721057 CCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCT 720998 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 |||||| |||||| || || | ||| || || | ||| || || | ||| Sbjct 720997 TTGTCTTGGATCTTCTGCTTGACATTGTCAATGGTATCAGAGGACTCGACCTCGAGGGTG 720938 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| || || || || ||||||||||| Sbjct 720937 ATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 720900 Score = 114 bits (126), Expect = 8e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| ||||| |||||||| || ||| |||||| ||||||||||| || || Sbjct 721583 GCCACCGCGAAGGCGCAATACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCAGA 721524 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | || ||||| || || || ||||| || | ||||| ||||| || || Sbjct 721523 AAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAAATGAGGCGCTGCTGGTCTGGGGG 721464 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||| ||| |||||| || || | ||| || || | || || Sbjct 721463 AATACCCTCCTTATCTTGGATCTTCTGCTTGACATTGTCAATGGTATCAGAGGATTCGAC 721404 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || ||||| || || || || ||||||||||| Sbjct 721403 CTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 721356 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| |||||| ||||||||| |||||| || ||||| ||||| || || || || Sbjct 721345 AGGCGCAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTACGG 721286 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | || || ||||| || || | ||||| ||||| || || | || ||| Sbjct 721285 CCATCTTCCAACTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCTGGAGGAATGCCTTCC 721226 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| ||||| || || | || || || ||||| | ||| || || | ||| Sbjct 721225 TTATCTTGAATCTTCTGCTTGA-CGTTATCGATCGTGTCAGAGGACTCGACCTCAAGGGT 721167 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| || || || || ||||||||||| Sbjct 721166 GATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 721128 >seq53 Length=681236 Score = 118 bits (130), Expect = 7e-22 Identities = 161/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || || |||||||||||| |||||||| ||||| || || Sbjct 253049 AGACGGAGGACCAAGTGAAGGGTCGACTCCTTTTGAATATTATAATCGGAAAGCGTACGT 253108 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||||||||| || || ||||| || | |||||| ||||| || || | || ||| Sbjct 253109 CCATCTTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGAATACCTTCC 253168 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| || || |||||| | || ||||| | ||| || |||| || Sbjct 253169 TTGTCCTGGATTTTCTG-TTTAACATTGTCGATAGTGTCGGAGGACTCTACCTCCAAAGT 253227 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || || || ||||| | || || |||||||||||||| || Sbjct 253228 AATGGTCTTGCCGGTGAGTGTCTTGACAAAAATCTGCATTTT 253269 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||| | ||||| || || || ||||||||| || || || || || Sbjct 252356 CCGCCGCGGAGACGAAGGACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAG 252415 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | |||||||| ||||| ||||| || || | ||||| ||||| || || Sbjct 252416 AGCGTACGACCATCTTCAAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGA 252475 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| ||||| || || | || || || ||||| | ||| || Sbjct 252476 ATACCTTCCTTGTCCTGAATCTTCTGCTTGA-CGTTATCGATGGTGTCGGAGGACTCAAC 252534 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || |||||||||||||| || || || ||||||||||| Sbjct 252535 TTCCAAAGTGATAGTTTTACCGGTTAAAGTCTTGACGAAAATCTGCAT 252582 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||| | ||||| || || || ||||||||| || || || || || Sbjct 252812 CCGCCGCGGAGACGAAGGACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAG 252871 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | |||||||| ||||| ||||| || || | ||||| ||||| || || Sbjct 252872 AGCGTACGACCATCTTCAAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGA 252931 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| ||||| || || | || || || ||||| | ||| || Sbjct 252932 ATACCTTCCTTGTCCTGAATCTTCTGCTTGA-CGTTATCGATGGTGTCGGAGGACTCAAC 252990 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || |||||||||||||| || || || ||||||||||| Sbjct 252991 TTCCAAAGTGATAGTTTTACCGGTTAAAGTCTTGACGAAAATCTGCAT 253038 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | || | ||||| ||| ||||| ||||| ||||| || || Sbjct 252584 CCGCCGCGAAGACGAAGAACTAGGTGGAGGGTGGATTCCTTCTGAATATTATAGTCAGAG 252643 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || ||||| ||||| ||||| || || | |||||| ||||| || || Sbjct 252644 AGCGTGCGGCCATCCTCAAGCTGTTTTCCGGCGAAAATAAGACGCTGCTGGTCTGGAGGA 252703 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| ||||| || || | || | || ||||| ||| || Sbjct 252704 ATACCTTCCTTGTCCTGAATCTTCTGCTTGA-CGTTGTCGATGGTGTCGGAAGACTCAAC 252762 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || || || | || || || ||||||||||| Sbjct 252763 TTCCAAAGTGATTGTCTTGCCAGTGAGTGTCTTGACGAAAATCTGCAT 252810 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | |||||| | ||||| || || || ||||||||| || || || || || Sbjct 252127 GCCACCACGAAGACGAAGGACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGA 252186 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || ||||| ||||| ||||| || || | |||||| ||||| || || Sbjct 252187 GAGCGTGCGACCATCCTCAAGCTGTTTTCCGGCGAAAATAAGACGCTGCTGGTCTGGAGG 252246 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCA 34657 | || |||||||| ||||| || || | || | || ||||| ||| | Sbjct 252247 AATACCTTCCTTGTCCTGAATCTTCTGCTTGA-CGTTGTCGATGGTGTCGGAAGACTCAA 252305 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || || || || || | || || || ||||||||||| Sbjct 252306 CTTCCAAAGTGATTGTCTTGCCAGTGAGTGTCTTGACGAAAATCTGCAT 252354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729070664154