Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq84 145 7e-30 seq53 136 3e-27 seq62 89.7 4e-13 >seq84 Length=1068272 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||||||||| | || || ||||| || || | || Sbjct 721128 ATGCAGATTTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCT 721187 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| || || |||||||| || |||||||| || || || || Sbjct 721188 GACACGATCGATAACGTCAAGCAGAAGATTCAAGATAAGGAAGGCATTCCTCCAGACCAG 721247 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || |||||||| | ||| | |||||||||||| Sbjct 721248 CAGCGCCTCATTTTCGCCGGCAAGCAGTTGGAAGATGGCCGTACCCTCTCCGATTACAAC 721307 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | || ||||| |||| | || ||||| || Sbjct 721308 ATCCAGAAGGAGTCCACTCTCCACTTGGTGCTGCGCCTCCGTGGTGGTAT 721357 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||||||||| | || || || || || || | || Sbjct 720900 ATGCAGATTTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCT 720959 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| || || || ||||||||||| || || || || || || Sbjct 720960 GATACCATTGACAATGTCAAGCAGAAGATCCAAGACAAAGAGGGTATTCCCCCAGACCAG 721019 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||||| || | || || | ||| |||| || || ||| Sbjct 721020 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGTACCCTTTCTGACTATAAC 721079 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | |||||||| |||||| | || ||||| || Sbjct 721080 ATCCAGAAGGAGTCTACTCTTCATTTGGTCTTGCGTCTCCGTGGTGGTAT 721129 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||||||||| | || || ||||| || ||| | || Sbjct 721356 ATGCAGATTTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTTGAGGTCGAATCCTCT 721415 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| || || || ||||| || || || || || || || || Sbjct 721416 GATACCATTGACAATGTCAAGCAGAAGATCCAAGATAAGGAGGGTATTCCCCCAGACCAG 721475 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || ||||| || | || || | ||| |||| || || ||| Sbjct 721476 CAGCGCCTCATTTTTGCTGGCAAGCAGCTTGAGGATGGCCGTACCCTTTCTGACTATAAC 721535 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| |||||||| ||| | |||||||| ||||| | || |||||| Sbjct 721536 ATTCAGAAGGAGTCCACCCTTCATTTGGTATTGCGCCTTCGCGGTGGC 721583 >seq53 Length=681236 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || ||||||||| | |||||| | || || || | ||| Sbjct 253266 ATGCAGATTTTTGTCAAGACACTCACCGGCAAGACCATTACTTTGGAGGTAGAGTCCTCC 253207 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||||| ||||| || ||||| ||||| || || || || || Sbjct 253206 GACACTATCGACAATGTTAAACAGAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCAG 253147 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || ||| | ||||| | || |||||||||| || Sbjct 253146 CAGCGTCTCATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACGCTTTCCGATTATAAT 253087 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||||||| | || ||||| | ||| | || || || || Sbjct 253086 ATTCAAAAGGAGTCGACCCTTCACTTGGTCCTCCGTCTCCGTGGAGGTAT 253037 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | || ||| | ||||| || | ||| Sbjct 252354 ATGCAGATTTTCGTCAAGACACTCACTGGCAAGACAATCACTTTGGAAGTTGAGTCTTCC 252295 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || ||||| ||||| ||||| || || || || || Sbjct 252294 GACACCATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAAGGTATTCCTCCAGACCAG 252235 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| ||||| | || || || || | || || ||||| Sbjct 252234 CAGCGTCTTATTTTCGCCGGAAAACAGCTTGAGGATGGTCGCACGCTCTCTGACTACAAT 252175 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || ||||||||||| ||| | || ||||| | ||| | || |||||| Sbjct 252174 ATCCAAAAGGAGTCTACCCTTCACTTGGTCCTTCGTCTTCGTGGTGGC 252127 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| | ||||| || |||| ||| | ||||| || | ||| Sbjct 252582 ATGCAGATTTTCGTCAAGACTTTAACCGGTAAAACTATCACTTTGGAAGTTGAGTCCTCC 252523 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || ||||| ||||| ||||| || || || || || Sbjct 252522 GACACCATCGATAACGTCAAGCAGAAGATTCAGGACAAGGAAGGTATTCCCCCAGACCAG 252463 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | |||||| ||||| | ||||| || || | || || ||||| Sbjct 252462 CAGCGCCTCATCTTCGCCGGAAAACAGCTTGAAGATGGTCGTACGCTCTCTGACTACAAT 252403 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| ||| | || ||||| | ||| | || || || || Sbjct 252402 ATCCAAAAGGAGTCTACCCTTCACTTGGTCCTTCGTCTCCGCGGCGGTAT 252353 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| | ||||| || |||| ||| | ||||| || | ||| Sbjct 253038 ATGCAGATTTTCGTCAAGACTTTAACCGGTAAAACTATCACTTTGGAAGTTGAGTCCTCC 252979 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || ||||| ||||| ||||| || || || || || Sbjct 252978 GACACCATCGATAACGTCAAGCAGAAGATTCAGGACAAGGAAGGTATTCCCCCAGACCAG 252919 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | |||||| ||||| | ||||| || || | || || ||||| Sbjct 252918 CAGCGCCTCATCTTCGCCGGAAAACAGCTTGAAGATGGTCGTACGCTCTCTGACTACAAT 252859 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| ||| | || ||||| | ||| | || || || || Sbjct 252858 ATCCAAAAGGAGTCTACCCTTCACTTGGTCCTTCGTCTCCGCGGCGGTAT 252809 >seq62 Length=1732855 Score = 89.7 bits (98), Expect = 4e-13 Identities = 112/153 (73%), Gaps = 3/153 (2%) Strand=Plus/Minus Query 27065 CAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGC 27124 ||||||| ||| || ||| | ||| || || || || || |||||||| || | || Sbjct 1321016 CAAACAACAAA---AAAACATAACAGGTATTCCCCCAGACCAGCAGCGTTTGATTTTTGC 1320960 Query 27125 CGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGAC 27184 |||||| || | || || || || | ||||| ||||||||||| ||||||||||| Sbjct 1320959 CGGCAAGCAGCTCGAGGATGGTCGCACTTTGTCCGACTACAACATTCAGAAGGAGTCGAC 1320900 Query 27185 CTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||| | ||| | || ||||| || Sbjct 1320899 CTTGCACTTGGTTCTTCGTCTTCGTGGTGGTAT 1320867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434917649765760