Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq53 192 1e-43 seq84 176 1e-38 seq78 95.1 3e-14 seq62 95.1 3e-14 >seq53 Length=681236 Score = 192 bits (212), Expect = 1e-43 Identities = 181/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||| | |||||| || ||||| ||||| || |||||||| | ||| Sbjct 253042 TCCACGGAGACGGAGGACCAAGTGAAGGGTCGACTCCTTTTGAATATTATAATCGGAAAG 253101 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||||||||| || ||||| || || ||||| || || || ||||| ||||||| Sbjct 253102 CGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGAAT 253161 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||||||||||||||||| || ||||| || || ||||| ||||| ||| || ||||| Sbjct 253162 ACCTTCCTTGTCCTGGATTTTCTGTTTAACATTGTCGATAGTGTCGGAGGACTCTACCTC 253221 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATG 211120 | ||| || ||||| || ||||| ||||| ||||| | |||||||||||| Sbjct 253222 CAAAGTAATGGTCTTGCCGGTGAGTGTCTTGACAAAAATCTGCATTTTATG 253272 Score = 170 bits (188), Expect = 4e-37 Identities = 171/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| | |||||| || ||||| |||||||| || || || | || || Sbjct 252133 ACGAAGACGAAGGACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGT 252192 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || ||||| || || ||||| ||||| || || ||||| ||||||| || Sbjct 252193 GCGACCATCCTCAAGCTGTTTTCCGGCGAAAATAAGACGCTGCTGGTCTGGAGGAATACC 252252 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||| ||||| || || ||||| ||||||||||| || ||||| || | Sbjct 252253 TTCCTTGTCCTGAATCTTCTGCTTGACGTTGTCGATGGTGTCGGAAGACTCAACTTCCAA 252312 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| ||||| || ||||| ||||| || || | |||||| Sbjct 252313 AGTGATTGTCTTGCCAGTGAGTGTCTTGACGAAAATCTGCAT 252354 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | |||||| || ||||| |||||||| || || || | || || | |||||| Sbjct 252371 AGGACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTACGACCATCT 252430 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| || || |||||||| ||||| || ||||| || |||| |||||||||||| Sbjct 252431 TCAAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCC 252490 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || ||||| ||||||||||| ||| ||||| || | |||||| || Sbjct 252491 TGAATCTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCAACTTCCAAAGTGATAGTT 252550 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | |||||| || || | |||||| Sbjct 252551 TTACCGGTTAAAGTCTTGACGAAAATCTGCAT 252582 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | |||||| || ||||| |||||||| || || || | || || | |||||| Sbjct 252827 AGGACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTACGACCATCT 252886 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| || || |||||||| ||||| || ||||| || |||| |||||||||||| Sbjct 252887 TCAAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCC 252946 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || ||||| ||||||||||| ||| ||||| || | |||||| || Sbjct 252947 TGAATCTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCAACTTCCAAAGTGATAGTT 253006 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | |||||| || || | |||||| Sbjct 253007 TTACCGGTTAAAGTCTTGACGAAAATCTGCAT 253038 Score = 159 bits (176), Expect = 8e-34 Identities = 168/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || ||||| || ||||| || || || || ||||| || | || || Sbjct 252590 CGAAGACGAAGAACTAGGTGGAGGGTGGATTCCTTCTGAATATTATAGTCAGAGAGCGTG 252649 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||| || ||||| || || ||||| ||||| || || ||||| ||||||| ||| Sbjct 252650 CGGCCATCCTCAAGCTGTTTTCCGGCGAAAATAAGACGCTGCTGGTCTGGAGGAATACCT 252709 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||| ||||| || || ||||| ||||||||||| || ||||| || | | Sbjct 252710 TCCTTGTCCTGAATCTTCTGCTTGACGTTGTCGATGGTGTCGGAAGACTCAACTTCCAAA 252769 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || ||||| ||||| || || | |||||| Sbjct 252770 GTGATTGTCTTGCCAGTGAGTGTCTTGACGAAAATCTGCAT 252810 >seq84 Length=1068272 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||||||||| || |||||||| ||||| | ||||| | |||||| Sbjct 721339 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTACGGCCATCT 721280 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||||||| ||||| || ||||| || ||||| ||||||| |||||||| || Sbjct 721279 TCCAACTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCTGGAGGAATGCCTTCCTTATCT 721220 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || ||||| ||||| ||||||||| || ||||| || ||||| ||| Sbjct 721219 TGAATCTTCTGCTTGACGTTATCGATCGTGTCAGAGGACTCGACCTCAAGGGTGATGGTC 721160 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| || || | |||||| Sbjct 721159 TTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 721128 Score = 159 bits (176), Expect = 8e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| || ||||| || ||||||||||| || | || || | ||||| || |||||| Sbjct 720874 TGAAGGGTAGACTCCTTCTGGATGTTATAGTCAGAGAGAGTACGGCCATCCTCAAGCTGC 720815 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || ||||| || || || ||||| || |||| || |||||||| |||||||| Sbjct 720814 TTACCGGCAAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGGATCTTC 720755 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || ||||| || |||||||| ||| || ||||| || ||||| ||||| || ||| Sbjct 720754 TGCTTGACGTTGTCAATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGTG 720695 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 |||||||| || || | |||||| Sbjct 720694 AGAGTCTTAACGAAGATCTGCAT 720672 Score = 159 bits (176), Expect = 8e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 |||||||| ||||| || ||||||||||| || | |||||| | ||||| || |||||| Sbjct 721102 TGAAGAGTAGACTCCTTCTGGATGTTATAGTCAGAAAGGGTACGGCCATCCTCAAGCTGC 721043 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || ||||| || || || ||||| || |||| || || ||||| |||||||| Sbjct 721042 TTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCTTTGTCTTGGATCTTC 720983 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || || || || ||||| |||||| || |||||||| ||||| ||||| || || Sbjct 720982 TGCTTGACATTGTCAATGGTATCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTC 720923 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | ||||| || || | |||||| Sbjct 720922 AAGGTCTTGACGAAAATCTGCAT 720900 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| |||||||| || || |||||||| || | |||||| | ||||| || |||||| Sbjct 721558 TGAAGGGTGGACTCCTTCTGAATGTTATAGTCAGAAAGGGTACGGCCATCCTCAAGCTGC 721499 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || || || ||||| || ||||| || |||| || ||||| || |||||||| Sbjct 721498 TTGCCAGCAAAAATGAGGCGCTGCTGGTCTGGGGGAATACCCTCCTTATCTTGGATCTTC 721439 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || || || || ||||| |||||| ||| ||||| || ||||| ||||| || || Sbjct 721438 TGCTTGACATTGTCAATGGTATCAGAGGATTCGACCTCAAGGGTGATGGTCTTGCCGGTC 721379 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | ||||| || || | |||||| Sbjct 721378 AAGGTCTTGACGAAAATCTGCAT 721356 >seq78 Length=372185 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||| ||||| || || || || |||||||||||||| || ||||| Sbjct 198206 CCCTCCTTGTCCTGAATCTTCTGCTTGACATTGTCGATGGTGTCAGAAGACTCGACCTCA 198147 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| |||||||| || || ||||| || || | ||||||||| Sbjct 198146 AGGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAAATCTGCATTTT 198100 >seq62 Length=1732855 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| || || ||||| || |||||||| || || ||||| Sbjct 1321481 CCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCA 1321540 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| |||||||| || || ||||| || || | ||||||||| Sbjct 1321541 AGGGTGATAGTCTTTCCAGTAAGGGTCTTAACGAAAATCTGCATTTT 1321587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159149950474370