Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq53 107 2e-18 seq84 100 2e-16 >seq53 Length=681236 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || ||| ||||| ||||||||||||| ||| || ||| | || ||| Sbjct 253058 ACCAAGTGAAGGGTCGACTCCTTTTGAATATTATAATCGGAAAGCGTACGTCCATCTTCA 253117 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 || || || || ||||| || |||||||||||||| | || | | || |||||| | Sbjct 253118 AGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGG 253177 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 ||||||||||| | | | | || ||| ||||| || |||| || || | || Sbjct 253178 ATTTTCTGTTTAACATTGTCGATAGTGTCGGAGGACTCTACCTCCAAAGTAATGGTCTTG 253237 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || || || || || ||||| || ||||| || Sbjct 253238 CCGGTGAGTGTCTTGACAAAAATCTGCATTTT 253269 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || ||| ||||| ||||| || || | || || || | || ||| Sbjct 252146 ACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTGCGACCATCCTCA 252205 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 |||||||| || || || ||||||||||||||||| | || | | || |||||| Sbjct 252206 AGCTGTTTTCCGGCGAAAATAAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGA 252265 Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || ||||| |||| ||| | | | || ||| ||||| || |||| ||||| | || Sbjct 252266 ATCTTCTGCTTGA-CGTTGTCGATGGTGTCGGAAGACTCAACTTCCAAAGTGATTGTCTT 252324 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || || || || || ||||| Sbjct 252325 GCCAGTGAGTGTCTTGACGAAAATCTGCAT 252354 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || ||| ||||| ||||| || || | || || || | || ||| Sbjct 252374 ACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTACGACCATCTTCA 252433 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 |||||||| || || || || || ||||||||||| | ||| | | || |||||| Sbjct 252434 AGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGA 252493 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || ||||| |||| | | | || ||| ||||| || |||| |||||| |||| Sbjct 252494 ATCTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCAACTTCCAAAGTGATAGTTTTA 252553 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || | || || || || || ||||| Sbjct 252554 CCGGTTAAAGTCTTGACGAAAATCTGCAT 252582 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || ||| ||||| ||||| || || | || || || | || ||| Sbjct 252830 ACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTACGACCATCTTCA 252889 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 |||||||| || || || || || ||||||||||| | ||| | | || |||||| Sbjct 252890 AGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGA 252949 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || ||||| |||| | | | || ||| ||||| || |||| |||||| |||| Sbjct 252950 ATCTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCAACTTCCAAAGTGATAGTTTTA 253009 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || | || || || || || ||||| Sbjct 253010 CCGGTTAAAGTCTTGACGAAAATCTGCAT 253038 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || |||||||| || | || || || | || ||||||||||| || || || Sbjct 252620 TCCTTCTGAATATTATAGTCAGAGAGCGTGCGGCCATCCTCAAGCTGTTTTCCGGCGAAA 252679 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 ||||||||||||||||| | || | | || |||||| || ||||| |||| ||| Sbjct 252680 ATAAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGAATCTTCTGCTTGA-CGTT 252738 Query 39214 G-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | || ||| ||||| || |||| ||||| | || || || || || || || Sbjct 252739 GTCGATGGTGTCGGAAGACTCAACTTCCAAAGTGATTGTCTTGCCAGTGAGTGTCTTGAC 252798 Query 39273 AAAGATTTGCAT 39284 || || ||||| Sbjct 252799 GAAAATCTGCAT 252810 >seq84 Length=1068272 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || |||||||| || || ||| || || || ||||| || | ||| || || | Sbjct 721114 CGCAAGACCAAATGAAGAGTAGACTCCTTCTGGATGTTATAGTCAGAAAGGGTACGGCCA 721055 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || |||||||| ||||| ||||| || |||||||||||||| | ||| | | ||||||| Sbjct 721054 TCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCTTTG 720995 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || ||| ||||| |||| | | | ||||| ||||| || || | ||||| Sbjct 720994 TCTTGGATCTTCTGCTTGACATTGTCAATGGTATCAGAGGACTCGACCTCGAGGGTGATG 720935 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||| || || || || || ||||| Sbjct 720934 GTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 720900 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || |||||||| || || ||| || || || ||||| || | || || || | Sbjct 720886 CGCAAGACCAAATGAAGGGTAGACTCCTTCTGGATGTTATAGTCAGAGAGAGTACGGCCA 720827 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || |||||||| || || ||||| || |||||||||||||| | ||| | | ||| ||| Sbjct 720826 TCCTCAAGCTGCTTACCGGCAAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTTG 720767 Query 39190 TCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 || ||| ||||| |||| ||| | | | || ||| ||||| || || | ||||| Sbjct 720766 TCTTGGATCTTCTGCTTGA-CGTTGTCAATGGTGTCGGAGGACTCGACCTCAAGGGTGAT 720708 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || || ||||| ||||| ||||| Sbjct 720707 GGTCTTGCCGGTGAGAGTCTTAACGAAGATCTGCAT 720672 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| || |||||||| || ||| ||| || || || ||||| || | ||| || || | Sbjct 721571 GCGCAATACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCAGAAAGGGTACGGCC 721512 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || |||||||| ||||| ||||| || || ||||||||||| | ||| | | ||| || Sbjct 721511 ATCCTCAAGCTGCTTGCCAGCAAAAATGAGGCGCTGCTGGTCTGGGGGAATACCCTCCTT 721452 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 || ||| ||||| |||| | | | ||||| || || || || | ||||| Sbjct 721451 ATCTTGGATCTTCTGCTTGACATTGTCAATGGTATCAGAGGATTCGACCTCAAGGGTGAT 721392 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||| || || || || || ||||| Sbjct 721391 GGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 721356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429544877557994