Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq53 127 1e-24 seq84 98.7 7e-16 >seq53 Length=681236 Score = 127 bits (140), Expect = 1e-24 Identities = 155/209 (74%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 23600 AATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAG 23659 || ||| ||||||||||||||| || || || ||||| || || || || ||| | || | Sbjct 253277 AAATACATAAAATGCAGATTTTTGTCAAGACACTCACCGGCAAGACCATTACTTTGGAGG 253218 Query 23660 TTGACTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTA 23718 | || ||| | |||||| | || ||| || ||||| ||||| ||||| |||||| | Sbjct 253217 TAGAGTCCTCCGACACTATCGACAATGTT-AAACAGAAAATCCAGGACAAGGAAGGTATT 253159 Query 23719 CCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTA 23778 || ||||| || |||||| | || ||||| || || ||||| ||||| | ||| || | Sbjct 253158 CCTCCAGACCAGCAGCGTCTCATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACGCTT 253099 Query 23779 GGCGATTACAACATACAAAAAGAGTCCAC 23807 |||||| || || ||||| ||||| || Sbjct 253098 TCCGATTATAATATTCAAAAGGAGTCGAC 253070 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || ||||| || || || |||||| | |||||||| || | Sbjct 252354 ATGCAGATTTTCGTCAAGACACTCACTGGCAAGACAATCACTTTGGAAGTTGAGTCTTCC 252295 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||| ||||| |||||| | || ||||| || Sbjct 252294 GACACCATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAAGGTATTCCTCCAGACCAG 252235 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || ||||| ||||| || || || | ||||| | || ||||| Sbjct 252234 CAGCGTCTTATTTTCGCCGGAAAACAGCTTGAGGATGGTCGCACGCTCTCTGACTACAAT 252175 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 252174 ATCCAAAAGGAGTCTAC 252158 Score = 104 bits (114), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || || ||||| |||||| | |||||||| ||| | Sbjct 252582 ATGCAGATTTTCGTCAAGACTTTAACCGGTAAAACTATCACTTTGGAAGTTGAGTCCTCC 252523 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||| ||||| |||||| | || ||||| || Sbjct 252522 GACACCATCGATAACGTCAAGCAGAAGATTCAGGACAAGGAAGGTATTCCCCCAGACCAG 252463 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA----CGAACGCACTTTAGGCGATTA 23786 ||||| | || || ||||| ||||| || ||||| || |||| || | || || Sbjct 252462 CAGCGCCTCATCTTCGCCGGAAAACAGCTTGAAGATGGTCGTACGCTCTCT----GACTA 252407 Query 23787 CAACATACAAAAAGAGTCCAC 23807 ||| || ||||| ||||| || Sbjct 252406 CAATATCCAAAAGGAGTCTAC 252386 Score = 104 bits (114), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || || ||||| |||||| | |||||||| ||| | Sbjct 253038 ATGCAGATTTTCGTCAAGACTTTAACCGGTAAAACTATCACTTTGGAAGTTGAGTCCTCC 252979 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||| ||||| |||||| | || ||||| || Sbjct 252978 GACACCATCGATAACGTCAAGCAGAAGATTCAGGACAAGGAAGGTATTCCCCCAGACCAG 252919 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA----CGAACGCACTTTAGGCGATTA 23786 ||||| | || || ||||| ||||| || ||||| || |||| || | || || Sbjct 252918 CAGCGCCTCATCTTCGCCGGAAAACAGCTTGAAGATGGTCGTACGCTCTCT----GACTA 252863 Query 23787 CAACATACAAAAAGAGTCCAC 23807 ||| || ||||| ||||| || Sbjct 252862 CAATATCCAAAAGGAGTCTAC 252842 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || ||||| || || || |||||| | |||||||| || | Sbjct 252810 ATGCAGATTTTCGTCAAGACACTCACTGGCAAGACAATCACTTTGGAAGTTGAGTCTTCC 252751 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||| ||||| |||||| | || ||||| || Sbjct 252750 GACACCATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAAGGTATTCCTCCAGACCAG 252691 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || ||||| ||||| || || || | ||||| | || || || Sbjct 252690 CAGCGTCTTATTTTCGCCGGAAAACAGCTTGAGGATGGCCGCACGCTCTCTGACTATAAT 252631 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || || ||||| | || ||||| Sbjct 252630 ATTCAGAAGGAATCCACCCTCCACCTAGTT 252601 >seq84 Length=1068272 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||| | || || || || ||||| ||||| || || ||| | Sbjct 720900 ATGCAGATTTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCT 720959 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || || || || |||||||| ||| | || ||||| || Sbjct 720960 GATACCATTGACAATGTCAAGCAGAAGATCCAAGACAAAGAGGGTATTCCCCCAGACCAG 721019 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||| || || || || | || || | || || ||| Sbjct 721020 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGTACCCTTTCTGACTATAAC 721079 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || || || ||||| || | ||||| || || Sbjct 721080 ATCCAGAAGGAGTCTACTCTTCATTTGGTCTT 721111 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||| | || || || || ||||| || || || || ||| | Sbjct 721128 ATGCAGATTTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCT 721187 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||| || || ||||| | || ||||| || Sbjct 721188 GACACGATCGATAACGTCAAGCAGAAGATTCAAGATAAGGAAGGCATTCCTCCAGACCAG 721247 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || |||||||| || ||||||| | || || | |||||||||| Sbjct 721248 CAGCGCCTCATTTTCGCCGGCAAGCAGTTGGAAGATGGCCGTACCCTCTCCGATTACAAC 721307 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 721308 ATCCAGAAGGAGTCCAC 721324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009031510104