Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq84 172 1e-37 seq53 158 3e-33 seq62 109 1e-18 seq78 102 2e-16 seq48 93.3 9e-14 >seq84 Length=1068272 Score = 172 bits (190), Expect = 1e-37 Identities = 177/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | |||| ||| | || || || |||||||| ||||||| Sbjct 720899 ACCACCACGGAGACGCAAGACCAAATGAAGGGTAGACTCCTTCTGGATGTTATAGTCAGA 720840 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| || || || ||||||||||| | ||| || ||||| || Sbjct 720839 GAGAGTACGGCCATCCTCAAGCTGCTTACCGGCAAAGATGAGACGCTGCTGGTCTGGGGG 720780 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||||||||||||||||||||||| ||||| ||| | || || ||||| || | |||| Sbjct 720779 AATACCCTCCTTGTCTTGGATCTTCTGCTTG-ACGTTGTCAATGGTGTCGGAGGACTCGA 720721 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || ||||| ||||| || || | |||||||||||| |||||||| Sbjct 720720 CCTCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTAACGAAGATCTGCAT 720672 Score = 167 bits (184), Expect = 5e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | |||| ||| | || || || |||||||| ||||||| Sbjct 721127 ACCACCACGGAGACGCAAGACCAAATGAAGAGTAGACTCCTTCTGGATGTTATAGTCAGA 721068 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||||||||| || || || ||||||||||| | ||| || ||||| || Sbjct 721067 AAGGGTACGGCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGG 721008 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||||||||| |||||||||||||| ||| || || | || || || || || | |||| Sbjct 721007 AATACCCTCTTTGTCTTGGATCTTCTGC-TTGACATTGTCAATGGTATCAGAGGACTCGA 720949 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | ||||| ||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 720948 CCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 720900 Score = 156 bits (172), Expect = 9e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || ||||| | ||||| ||| | ||| || || || ||||| ||||||| | Sbjct 721582 CCACCGCGAAGGCGCAATACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCAGAA 721523 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||||||||| || || || || ||||| || | || || ||||| ||| Sbjct 721522 AGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAAATGAGGCGCTGCTGGTCTGGGGGA 721463 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||| ||||||||||| ||| || || | || || || || || | |||||| Sbjct 721462 ATACCCTCCTTATCTTGGATCTTCTGC-TTGACATTGTCAATGGTATCAGAGGATTCGAC 721404 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 721403 CTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 721356 Score = 145 bits (160), Expect = 2e-29 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || |||| || | ||| || || ||||||||||| || | Sbjct 721355 ACCACCACGGAGGCGCAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGA 721296 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || |||||||| || | || || ||||| || || | || || ||||| || Sbjct 721295 GAGGGTACGGCCATCTTCCAACTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCTGGAGG 721236 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||| || ||||| ||||| ||||| ||| || ||| ||||||| ||||| || | |||| Sbjct 721235 AATGCCTTCCTTATCTTGAATCTTCTGC-TTGACGTTATCGATCGTGTCAGAGGACTCGA 721177 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || ||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 721176 CCTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 721128 >seq53 Length=681236 Score = 158 bits (174), Expect = 3e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || || || ||||| || || || | ||| ||| || || || || ||||||| Sbjct 252583 ACCGCCGCGAAGACGAAGAACTAGGTGGAGGGTGGATTCCTTCTGAATATTATAGTCAGA 252642 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||||||||| || ||||| ||||| || || | ||| || ||||| || Sbjct 252643 GAGCGTGCGGCCATCCTCAAGCTGTTTTCCGGCGAAAATAAGACGCTGCTGGTCTGGAGG 252702 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||||| |||||||| || ||||| ||| || ||| | ||||| ||||| |||| || | Sbjct 252703 AATACCTTCCTTGTCCTGAATCTTCTGC-TTGACGTTGTCGATGGTGTCGGAAGACTCAA 252761 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| | |||||| ||||| || || | ||||| ||||| |||||||| Sbjct 252762 CTTCCAAAGTGATTGTCTTGCCAGTGAGTGTCTTGACGAAAATCTGCAT 252810 Score = 129 bits (142), Expect = 1e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || |||| || | || || ||||| || || || || | Sbjct 253039 ACCTCCACGGAGACGGAGGACCAAGTGAAGGGTCGACTCCTTTTGAATATTATAATCGGA 253098 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 |||||| || ||||| || ||||| || || |||||||| | ||| || ||||| || Sbjct 253099 AAGCGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGAGG 253158 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| |||||||| ||||| || ||| || | ||||||||||| || | || || Sbjct 253159 AATACCTTCCTTGTCCTGGATTTTCTGTTTAACATTGTCGATAGTGTCGGAGGACTCTAC 253218 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || | ||| || ||||| || || | ||||| || || ||||||||||| Sbjct 253219 CTCCAAAGTAATGGTCTTGCCGGTGAGTGTCTTGACAAAAATCTGCATTTT 253269 >seq62 Length=1732855 Score = 109 bits (120), Expect = 1e-18 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 317029 GGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCA 317088 ||||| || || | ||| || | | || || | ||| ||||| || ||||| ||||| Sbjct 139632 GGGAAGCCCTCAAGCTGGCCATCAGCGATGGCGCGCATAAGTGTGGATTTGCCGACACCA 139691 Query 317089 TTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGA 317148 ||||||||||| || || || || | ||| ||||||| ||| || ||||| || Sbjct 139692 TTGGGGCCGCAGAGGCCGTAACGCTGTCCACGGCGAAGATTAAGACGAGTCTTGTTGAGT 139751 Query 317149 AGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGG 317193 |||||| |||||||||| || || ||||||||||| ||||| ||| Sbjct 139752 AGAATCATACCACCATAAGCGAGGGAGAACTCACAGTCACAAAGG 139796 Score = 93.3 bits (102), Expect = 9e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 317029 GGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCA 317088 ||||| || || | ||| || | |||| || | ||| || |||||||| || ||||| Sbjct 527003 GGGAAGCCCTCAAGCTGGCCCTCAGCAATGGCACGCATGAGAGTCGACTTTCCGACACCA 527062 Query 317089 TTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGA 317148 |||||||| ||||||||||| || | || || || | ||||| ||||||| Sbjct 527063 TTGGGGCCACAAAGACCATAGCGCTGACCGCGGCGGAGGTTGAGGCGGGTCTTGTTCAAC 527122 Query 317149 AGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAG 317192 | ||| |||||||||| || ||||||||||| || || || || Sbjct 527123 AAGATCATACCACCATAAGCGAGAGAGAACTCGCAGTCGCAGAG 527166 Score = 93.3 bits (102), Expect = 9e-14 Identities = 90/113 (80%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 282995 ACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 |||||||||||| |||||||| ||| || ||| | || || ||||| |||| || || | Sbjct 1321480 ACCCTCCTTGTCCTGGATCTTCTGC-TTGACGTTGTCAATGGTGTCGGAAGACTCCACCT 1321538 Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATA 283106 | || ||||| ||||| || || | ||||||||||| |||||||||||| || Sbjct 1321539 CAAGGGTGATAGTCTTTCCAGTAAGGGTCTTAACGAAAATCTGCATTTTCCTA 1321591 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| |||| || || || || || || ||||||||||| | Sbjct 1320869 ACCACCACGAAGACGAAGAACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAGTCGGA 1320928 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||||| |||||||| || || || |||||||| |||||||| || ||||| || Sbjct 1320929 CAAAGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAAATCAAACGCTGCTGGTCTGGGGG 1320988 Query 282992 AATACC 282997 |||||| Sbjct 1320989 AATACC 1320994 >seq78 Length=372185 Score = 102 bits (112), Expect = 2e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| ||| || || || ||||||||||||||||||| Sbjct 198874 ACCACCACGGAGACGGAGAACCAAATGCAAGGTTGACTCCTTTTGGATGTTGTAGTCAGA 198815 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || |||||||| || || || || || ||||||||||| || ||||| || Sbjct 198814 AAGAGTACGACCATCCTCAAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGG 198755 Query 282992 AATACC 282997 |||||| Sbjct 198754 AATACC 198749 Score = 93.3 bits (102), Expect = 9e-14 Identities = 91/115 (79%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 282995 ACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 |||||||||||| || ||||| ||||| || | ||||| ||||| |||| ||||| | Sbjct 198207 ACCCTCCTTGTCCTGAATCTTCTGCTTG-ACATTGTCGATGGTGTCAGAAGACTCGACCT 198149 Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATATA 283108 | || ||||| ||||| || || | ||||| ||||| |||||||||||| |||| Sbjct 198148 CAAGGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAAATCTGCATTTTCCTATA 198094 >seq48 Length=811349 Score = 93.3 bits (102), Expect = 9e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 317054 CAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAGACCATACCGAT 317113 |||| || | ||| || |||||||| || |||| ||||| ||||||||||| || || | Sbjct 473824 CAATGGCACGCATGAGAGTCGACTTTCCGACACCGTTGGGTCCGCAAAGACCGTAACGCT 473765 Query 317114 TTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACCATATGCCAGAG 317173 || ||||| | |||||| ||||||| | ||| |||||||||| || |||| Sbjct 473764 GACCACGGCGGAGATTGAGACGGGTCTTGTTCAACAAGATCATACCACCATAAGCAAGAG 473705 Query 317174 AGAACTCACAATCACACAG 317192 ||||||| ||||| || || Sbjct 473704 AGAACTCGCAATCGCAGAG 473686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046737349234252