Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq53 159 8e-34 seq84 141 2e-28 seq78 89.7 1e-12 >seq53 Length=681236 Score = 159 bits (176), Expect = 8e-34 Identities = 159/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||| | || || ||||| ||||| | || || || ||| ||| Sbjct 252579 CAGATTTTCGTCAAGACTTTAACCGGTAAAACTATCACTTTGGAAGTTGAGTCCTCCGAC 252520 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| || |||||||||||||| ||||| || || || |||||||| Sbjct 252519 ACCATCGATAACGTCAAGCAGAAGATTCAGGACAAGGAAGGTATTCCCCCAGACCAGCAG 252460 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||||||||||||||| |||||||| | || || | || || || || Sbjct 252459 CGCCTCATCTTCGCCGGAAAACAGCTTGAAGATGGTCGTACGCTCTCTGACTACAATATC 252400 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || || || |||| Sbjct 252399 CAAAAGGAGTCTACCCTTCA-CTTG 252376 Score = 159 bits (176), Expect = 8e-34 Identities = 159/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||| | || || ||||| ||||| | || || || ||| ||| Sbjct 253035 CAGATTTTCGTCAAGACTTTAACCGGTAAAACTATCACTTTGGAAGTTGAGTCCTCCGAC 252976 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| || |||||||||||||| ||||| || || || |||||||| Sbjct 252975 ACCATCGATAACGTCAAGCAGAAGATTCAGGACAAGGAAGGTATTCCCCCAGACCAGCAG 252916 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||||||||||||||| |||||||| | || || | || || || || Sbjct 252915 CGCCTCATCTTCGCCGGAAAACAGCTTGAAGATGGTCGTACGCTCTCTGACTACAATATC 252856 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || || || |||| Sbjct 252855 CAAAAGGAGTCTACCCTTCA-CTTG 252832 Score = 158 bits (174), Expect = 3e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || || ||||| | || || || || ||| Sbjct 252807 CAGATTTTCGTCAAGACACTCACTGGCAAGACAATCACTTTGGAAGTTGAGTCTTCCGAC 252748 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| || |||||||||||||| ||||| || ||||| |||||||| Sbjct 252747 ACCATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAAGGTATTCCTCCAGACCAGCAG 252688 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| ||||||||||||||||| || ||||| | || || | || ||||| | Sbjct 252687 CGTCTTATTTTCGCCGGAAAACAGCTTGAGGATGGCCGCACGCTCTCTGACTATAATATT 252628 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || ||||| || || || || ||| Sbjct 252627 CAGAAGGAATCCACCCTCCACCTAGTT 252601 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || || ||||| | || || || || ||| Sbjct 252351 CAGATTTTCGTCAAGACACTCACTGGCAAGACAATCACTTTGGAAGTTGAGTCTTCCGAC 252292 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| || |||||||||||||| ||||| || ||||| |||||||| Sbjct 252291 ACCATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAAGGTATTCCTCCAGACCAGCAG 252232 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| ||||||||||||||||| || ||||| | || || | || || || || Sbjct 252231 CGTCTTATTTTCGCCGGAAAACAGCTTGAGGATGGTCGCACGCTCTCTGACTACAATATC 252172 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || || || |||| Sbjct 252171 CAAAAGGAGTCTACCCTTCA-CTTG 252148 >seq84 Length=1068272 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || | || || || || |||||||||||||| || ||| || Sbjct 720903 CAGATTTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCTGAT 720962 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| || ||||| || |||||||| || || || || |||||||| Sbjct 720963 ACCATTGACAATGTCAAGCAGAAGATCCAAGACAAAGAGGGTATTCCCCCAGACCAGCAG 721022 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| || ||||| | || ||| | || |||||| || Sbjct 721023 CGTCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGTACCCTTTCTGACTATAACATC 721082 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || || || || || ||| | || ||| | ||| Sbjct 721083 CAGAAGGAGTCTACTCTTCATTTGGTCTTGCGTCTC 721118 >seq78 Length=372185 Score = 89.7 bits (98), Expect = 1e-12 Identities = 86/110 (78%), Gaps = 3/110 (3%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||| || || || || ||||| || |||||||| ||||| || Sbjct 198100 AAAATGC---AGATTTTCGTCAAGACCCTTACCGGAAAGACCATCACCCTTGAGGTCGAG 198156 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 || ||||||||||| || ||||| || |||||||||||||| || || Sbjct 198157 TCTTCTGACACCATCGACAATGTCAAGCAGAAGATTCAGGACAAGGAGGG 198206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203729071652772