Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mortierella_20alpina_20[genbank_20GCA_5F001021685.1_202015-06-08] 1,962 sequences; 36,305,198 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1263 120 3e-22 seq1237 96.9 3e-15 >seq1263 Length=39644 Score = 120 bits (132), Expect = 3e-22 Identities = 339/509 (67%), Gaps = 15/509 (3%) Strand=Plus/Minus Query 52549 GTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCC 52608 ||||| || | ||||| |||| || ||||| |||| |||||| | | ||| | Sbjct 13054 GTTCCCTGCATTCGCAAGAAGGCTGCCTGGGCCCTGAAGTGGATCTCGGATGCCAACTCG 12995 Query 52609 ACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGT 52668 || ||||| || ||||| || || ||||| || |||||| | || || || || Sbjct 12994 ACCTTTGCTGAGCGTCTTGTTGCCTTTGCCGCCGTCGAAGGTATCTTCTTCTCTGGATCG 12935 Query 52669 TTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAA 52727 || || | || || | |||| || | ||| | | |||||||||||||| || || Sbjct 12934 TTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTC-TCATGCCCGGCCTCACCTTCTCGAA 12876 Query 52728 CGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTG-TATTATAATA 52786 |||| | || || || ||||| || | ||||| || ||||| || ||| | || | Sbjct 12875 CGAGCTCATCTCTCGTGACGAGGGTCTCCACACCGACTTTGCCTGCTTGCTCTTCT---- 12820 Query 52787 CGCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCTA-GACATGTTTAAAGAGGCCGTC 52845 ||| | | || || | | | ||| ||| ||||| | | ||||| ||| Sbjct 12819 CGCTCATGAA-GAGCCGTCCTGACCAGAAGCGTGTCTGTGACATCATCACCGAGGCTGTC 12761 Query 52846 GACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCAT--TGTTGGGCATGAACG 52903 | ||| || ||||||| | ||||| ||| | ||||| ||| || | |||||||||| Sbjct 12760 GCCATCGAGCAAGAGTTCCTCACGGATGCTCTCCCCGT--CATGCTGATCGGCATGAACG 12703 Query 52904 CGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAGCTCGGTC 52963 | | | ||| ||||||||||||||||||| ||| | ||| | | |||||| Sbjct 12702 CCAAGCTCATGAAGCAGTACATCGAGTTTGTTGCTGACCGTCTGCTCGTCGCTCTCGGTA 12643 Query 52964 AGCCGAAATACTATAATG-CGCGTAACCCCTTTTCGTTTATGAACAACATATCGCTCGAG 53022 | || || | || || | || | |||||||| |||||| || || || ||| || Sbjct 12642 ACCCCAAGCATTACAACGTCGAG-AACCCCTTCGACTTTATGGACTTGATCTCACTCCAG 12584 Query 53023 GGCAAAACAAACTTTTTCGAGAGACGTGT 53051 ||||| || ||||| || |||| ||||| Sbjct 12583 GGCAAGACCAACTTCTTTGAGAAGCGTGT 12555 >seq1237 Length=85294 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || || || || | ||| | || ||||||| || ||||| || || || || || || Sbjct 35482 TGACCACCACGGAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATATTGTAGTCA 35541 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | || | ||| |||||||| || || ||| |||| ||||| ||||| || || Sbjct 35542 GAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGG 35601 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || ||||| || ||||| ||| || || || | | || | ||||| | | |||| Sbjct 35602 GGAATGCCCTCCTTGTCTTGGATCTTCTGCTTGACATTGTCAATGGTGTCCGAAGACTCC 35661 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| | || | |||||||||||||| || || ||||| || |||||| Sbjct 35662 ACCTCCAACGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCATA 35712 Score = 82.4 bits (90), Expect = 8e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| || ||||| || ||||| || || || Sbjct 36020 CCACCACGGAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGAATATTGTAGTCAGAG 36079 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| |||||||| || || || |||| ||||| ||||| || ||||| Sbjct 36080 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGG 36139 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| || || || || | | || | ||||| | | ||| ||| Sbjct 36140 ATACCCTCCTTGTCTTGAATCTTCTGCTTGACGTTGTCAATGGTGTCCGAAGACTCGACC 36199 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGC 139767 || | ||| | ||||||||||| | || || ||||| || ||||| || Sbjct 36200 TCGAGGGTGATGGTCTTGCCGGTAAGGGTCTTGACGAAAATCTGCATGGC 36249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496051834030400