Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mortierella_20alpina_20[genbank_20GCA_5F001021685.1_202015-06-08] 1,962 sequences; 36,305,198 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1340 158 2e-34 seq1922 132 8e-27 seq42 132 8e-27 >seq1340 Length=186973 Score = 158 bits (174), Expect = 2e-34 Identities = 193/261 (74%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| ||| ||| || || |||||||| || ||||||||||| || || Sbjct 136465 GCCAAGCGCCATCGCAAGAT-TCTCCGTGACAACATCCAGGGCATCACCAAGCCCGCCAT 136523 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || || ||||| || ||||||||| |||| || | |||| || |||| Sbjct 136524 TCGTCGTCTCGCCCGCCGTGGAGGCGTCAAGCGTATCTCGGGCCTCATCTACGAGGAGAC 136583 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || || | ||| |||||||| ||| ||| |||| ||||| || ||| ||||| Sbjct 136584 CCGCTCCGTCCTCAAGGTCTTCCTCGAGAACGTCATCCGCGATGCCGTCACCTACACCGA 136643 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| || | ||| |||| || || | || || || || Sbjct 136644 GCACGCCAAGCGCAAGACCGTCACTTCGCTCGATGTCGTGTACGCTCTCAAGCGCCAGGG 136703 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 |||| | |||||||| || Sbjct 136704 ACGTACCCTCTATGGTTTCGG 136724 >seq1922 Length=6543 Score = 132 bits (146), Expect = 8e-27 Identities = 130/165 (79%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || |||||||| |||||||||||||| || || Sbjct 876 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGAATCACCAAGCCCGCCAT 934 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || ||||||||||| ||||||||| |||| || | |||| || |||| Sbjct 935 CCGTCGTCTCGCCCGTCGTGGTGGTGTCAAGCGTATCTCCGGCCTCATCTACGAGGAGAC 994 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGC 16596 || || | ||| |||||||| ||| ||| |||| ||| || Sbjct 995 CCGCTCCGTCCTCAAGGTCTTCCTCGAGAACGTCATCCGTGAAGC 1039 >seq42 Length=4960 Score = 132 bits (146), Expect = 8e-27 Identities = 130/165 (79%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| ||| |||||| || |||||||| |||||||||||||| ||||| Sbjct 435 GCCAAGCGCCACCGCAAGAT-TCTTCGTGACAACATCCAGGGAATCACCAAGCCCGCTAT 493 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| |||||||||||||| ||||||||| |||| || | |||| || |||| Sbjct 494 CCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCCGGCCTCATCTACGAGGAGAC 553 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGC 16596 || || | ||| |||||||| ||| ||| |||| ||| || Sbjct 554 CCGCTCCGTCCTCAAGGTCTTCCTCGAGAACGTCATCCGTGAAGC 598 Score = 84.2 bits (92), Expect = 3e-12 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||||| |||| || | |||| || |||| || || | ||| |||||||| Sbjct 592 GTGAAGCGTATCTCCGGCCTCATCTACGAGGAGACCCGCTCCGTCCTCAAGGTCTTCCTC 651 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| ||| || || ||| ||||||||||| || || ||||| |||||| Sbjct 652 GAGAACGTCATCCGTGACGCCGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACC 711 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | ||| ||||||| || | || || || || || | | || ||||| || Sbjct 712 TCGCTCGATGTCGTCTACGCCCTCAAGCGCCAGGGACGCACCCTCTACGGTTTCGG 767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073406129666