Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mortierella_20alpina_20[genbank_20GCA_5F001021685.1_202015-06-08] 1,962 sequences; 36,305,198 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1899 129 5e-25 seq1237 125 6e-24 seq1584 84.2 2e-11 >seq1899 Length=11869 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || ||||| || |||| || || || || | || Sbjct 5713 ATGCAGATTTTCGTCAAGACCCTGACTGGTAAGACCATCACCCTCGAGGTCGAGTCGTCC 5654 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| || || ||||| ||||||||||| || || || || || Sbjct 5653 GATACCATCGATAACGTCAAGCAGAAGATTCAGGACAAGGAGGGCATCCCCCCAGACCAG 5594 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||| ||| | ||||| ||| ||| |||| ||||||||| Sbjct 5593 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCTGATTACAAC 5534 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || || || || ||| | ||||| || Sbjct 5533 ATCCAGAAGGAGTCGACCCTCCATTTGGT 5505 Score = 100 bits (110), Expect = 2e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 22256 TCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACA 22315 |||| || || || || | | || ||| | ||| | |||| || || || ||||| | Sbjct 5904 TCACCCTCGAGGTCGAGTCGTCGGACACCATCGACAACGTCAAGCAGAAGATCCAAGATA 5845 Query 22316 AGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATC 22375 |||||||||| || || || || || || || || ||||||||||| ||| | ||||| Sbjct 5844 AGGAGGGTATCCCCCCAGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGACG 5785 Query 22376 ACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||||||| |||| || |||||||| || || || ||||| Sbjct 5784 GCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCCAC 5745 >seq1237 Length=85294 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || || ||||| || || |||| | || ||||| | | Sbjct 35711 ATGCAGATTTTCGTCAAGACCTTGACCGGCAAGACCATCACGTTGGAGGTGGAGTCTTCG 35652 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || |||||||||||||| ||||| || || || Sbjct 35651 GACACCATTGACAATGTCAAGCAGAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAG 35592 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||| ||| | ||||| ||| ||| |||| || ||||| Sbjct 35591 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCTGACTACAAT 35532 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || || || || ||| | || || || Sbjct 35531 ATCCAGAAGGAGTCGACCCTTCACTTGGT 35503 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | ||||| || || |||| || || || || | | Sbjct 36246 ATGCAGATTTTCGTCAAGACCCTTACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCG 36187 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || |||||||||||||||||||| || || || || Sbjct 36186 GACACCATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAGGGTATCCCTCCAGACCAG 36127 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | ||||| ||| ||| |||| || ||||| Sbjct 36126 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCTGACTACAAT 36067 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||| || || || ||| | || || || Sbjct 36066 ATTCAGAAGGAGTCGACCCTTCACTTGGT 36038 Score = 98.7 bits (108), Expect = 8e-16 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 22256 TCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACA 22315 |||| || || || || | | || ||| | ||| | |||| || || || ||||| | Sbjct 35902 TCACCCTCGAGGTCGAGTCGTCGGACACCATCGACAACGTCAAGCAGAAGATCCAAGATA 35843 Query 22316 AGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATC 22375 |||||||||| || || || || || ||||| || ||||||||||| ||| | ||||| Sbjct 35842 AGGAGGGTATCCCCCCAGACCAGCAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACG 35783 Query 22376 ACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGT 22427 ||| ||| |||| || |||||||| || || || || ||| | || || || Sbjct 35782 GCCGTACCCTCTCTGACTACAACATCCAGAAGGAGTCGACCCTTCACTTGGT 35731 >seq1584 Length=118991 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 |||||||| || || || || || || || ||||||||||| ||| | |||||| |||| Sbjct 13767 GGTATTCCCCCAGACCAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGC 13708 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGC 22440 || |||| ||||||||||| || || || || ||| | || || || | || | ||| Sbjct 13707 ACTCTCTCGGATTACAACATCCAGAAGGAGTCGACCCTTCACTTGGTCCTCCGTCTCCGC 13648 Query 22441 GGAGGT 22446 || ||| Sbjct 13647 GGTGGT 13642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419717963516530