Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mortierella_20alpina_20[genbank_20GCA_5F001021685.1_202015-06-08] 1,962 sequences; 36,305,198 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1899 113 1e-19 seq1237 105 2e-17 >seq1899 Length=11869 Score = 113 bits (124), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || || | ||| || || ||||| || | || || || || ||| Sbjct 5523 TCCTTCTGGATGTTGTAATCAGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAG 5582 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || |||||||| || |||||| || || || || ||||| || ||| || ||| Sbjct 5583 ATGAGACGCTGCTGG---TCTGGGGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTGACG 5639 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||| ||| || || ||||| ||||| ||||| || ||||| |||||| Sbjct 5640 TTATCGATGGTATCGGACGACTCGACCTCGAGGGTGATGGTCTTACCAGTCAGGGTCTTG 5699 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 5700 ACGAAAATCTGCAT 5713 >seq1237 Length=85294 Score = 105 bits (116), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | |||| || || || || ||||| ||||| | | Sbjct 36020 CCACCACGGAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGAATATTGTAGTCAGAG 36079 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 || || || ||||| || | || || || |||||||| |||||||| || ||||| Sbjct 36080 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGG---TCTGGA 36136 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||| || || || || || || ||| || ||||| || || | || || || Sbjct 36137 GGGATACCCTCCTTGTCTTGAATCTTCTGCTTGACGTTGTCAATGGTGTCCGAAGACTCG 36196 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 36197 ACCTCGAGGGTGATGGTCTTGCCGGTAAGGGTCTTGACGAAAATCTGCAT 36246 Score = 102 bits (112), Expect = 2e-16 Identities = 163/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| ||||| | || || | |||| || || || |||||||| ||||| Sbjct 35482 TGACCACCACGGAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATATTGTAGTCA 35541 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||| || || ||||| || | || || || || ||||| |||||||| || ||| Sbjct 35542 GAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGG---TCT 35598 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| || || || || || ||||| ||| || || || || || | || || Sbjct 35599 GGGGGAATGCCCTCCTTGTCTTGGATCTTCTGCTTGACATTGTCAATGGTGTCCGAAGAC 35658 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | |||||| ||||| ||||||| ||||||||||| |||||||| Sbjct 35659 TCCACCTCCAACGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 35711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179624745700236