Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mortierella_20alpina_20[genbank_20GCA_5F001021685.1_202015-06-08] 1,962 sequences; 36,305,198 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1263 140 3e-28 seq1237 131 2e-25 seq1899 109 5e-19 >seq1263 Length=39644 Score = 140 bits (154), Expect = 3e-28 Identities = 340/511 (67%), Gaps = 23/511 (5%) Strand=Plus/Minus Query 47070 CCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCACT 47129 |||||| | |||| ||||| | |||||| |||||| || | | ||| || Sbjct 13051 CCCTGCATTCGCAAGAAGGCTGCCTGGGCCCTGAAGTGGATCTCGGATGCCAACTCGACC 12992 Query 47130 CTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTT 47189 | || || ||| | | || || ||| |||||| || |||||||||| || || Sbjct 12991 TTTGCTGAGCGTCTTGTTGCCTTTGCCGCCGTCGAAGGTATCTTCTTCTCTGGATCGTTC 12932 Query 47190 GCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAG 47249 || | || || | | || | || | |||||||||||||| || |||||| Sbjct 12931 GCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTCACCTTCTCGAACGAG 12872 Query 47250 CTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGT---CTCTACTACAACACT 47306 || ||||| | ||||| || || |||||| |||||||||| |||| || || Sbjct 12871 CTCATCTCTCGTGACGAGGGTCTCCACACCGACTTTGCCTGCTTGCTCTTCTCGCTCATG 12812 Query 47307 A-GAGTCG-----ATCAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCC 47360 | ||| || | || ||| |||| || | ||||| | |||| || Sbjct 12811 AAGAGCCGTCCTGACCAGAAG-----CGTG-------TCTGTGACATCATCACCGAGGCT 12764 Query 47361 GTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGA-ATCTTTAGTGGGAATGAA 47419 |||||||| ||| ||||| || | || ||||| |||| || | | | || ||||| Sbjct 12763 GTCGCCATCGAGCAAGAGTTCCTCACGGATGCTCTCCCCGTCATGCTGA-TCGGCATGAA 12705 Query 47420 CGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAA 47479 ||| || | |||| |||||||||| ||||| || ||||| |||||||| || Sbjct 12704 CGCCAAGCTCATGAAGCAGTACATCGAGTTTGTTGCTGACCGTCTGCTCGTCGCTCTCGG 12645 Query 47480 GTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGA 47539 | |||||| |||| || |||||| || ||||| |||||| || || || ||| | Sbjct 12644 TAACCCCAAGCATTACAACGTCGAGAACCCCTTCGACTTTATGGACTTGATCTCACTCCA 12585 Query 47540 GGGCAAGACCAACTTTTTCGAGAAGCGCGTC 47570 ||||||||||||||| || |||||||| ||| Sbjct 12584 GGGCAAGACCAACTTCTTTGAGAAGCGTGTC 12554 >seq1237 Length=85294 Score = 131 bits (144), Expect = 2e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || ||||||||||| || Sbjct 36020 CCACCACGGAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGAATATTGTAGTCAGAG 36079 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || || ||| |||| | |||||||| || ||||| Sbjct 36080 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGG 36139 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||||||||| || |||||||||| |||| || | |||||||| | |||||| Sbjct 36140 ATACCCTCCTTGTCTTGAATCTTCTGCTTGACGTTG-TCAATGGTGTCCGAAGACTCGAC 36198 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 127116 |||| ||| | || |||||||| || || || || |||||||||||||| Sbjct 36199 CTCGAGGGTGATGGTCTTGCCGGTAAGGGTCTTGACGAAAATCTGCATGGC 36249 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || |||||||| || Sbjct 35485 CCACCACGGAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATATTGTAGTCAGAG 35544 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || || || |||| | |||||||| || || || Sbjct 35545 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGA 35604 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| ||| |||||||||| | || | |||||||| | ||| || Sbjct 35605 ATGCCCTCCTTGTCTTGGATCTTCTGCTTGACATTGTCAATGGTGTCCGAAGACTCCACC 35664 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || |||||||||| || || || ||||||||||| Sbjct 35665 TCCAACGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 35711 >seq1899 Length=11869 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||||| | || ||||| || || || |||||||| Sbjct 5487 CCACCACGAAGACGGAGGACCAAATGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGAG 5546 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || || || |||| | |||||||| || || || Sbjct 5547 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGG 5606 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| || |||||||||| | |||| ||| || | |||||| Sbjct 5607 ATGCCCTCCTTGTCCTGAATCTTCTGCTTGACGTTATCGATGGTATCGGACGACTCGACC 5666 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| ||| | || || || ||||| || || || |||||||||||| Sbjct 5667 TCGAGGGTGATGGTCTTACCAGTCAGGGTCTTGACGAAAATCTGCATG 5714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475489138342880