Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mortierella_20alpina_20[genbank_20GCA_5F001021685.1_202015-06-08] 1,962 sequences; 36,305,198 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1237 134 2e-26 seq1899 116 4e-21 seq1254 87.8 2e-12 seq1584 82.4 9e-11 >seq1237 Length=85294 Score = 134 bits (148), Expect = 2e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||||||||| || || || || |||| ||||||||||||||||| || Sbjct 35520 CTCCTTCTGGATATTGTAGTCAGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAA 35579 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | || ||||||||| |||||||| ||||| | Sbjct 35580 GATGAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTCTGCTTGACATT 35639 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || ||||| |||| ||||||||| ||||| |||| || || || Sbjct 35640 GTCAATGGTGTCCGAAGACTCCACCTCCAACGTGATGGTCTTGCCGGTCAAGGTCTTGAC 35699 Query 46582 AAAGATTTGCAT 46593 || || ||||| Sbjct 35700 GAAAATCTGCAT 35711 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || ||||||||||| || || || || |||| |||||||||||||||||||| Sbjct 36055 CTCCTTCTGAATATTGTAGTCAGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 36114 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | ||||||||| ||||||| ||||| ||| Sbjct 36115 GATGAGACGCTGCTGGTCTGGAGGGATACCCTCCTTGTCTTGAATCTTCTGCTTGA-CGT 36173 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| || || || || | |||||||| ||||| || || || || | Sbjct 36174 TGTCAATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTAAGGGTCTTGA 36233 Query 46581 CAAAGATTTGCAT 46593 | || || ||||| Sbjct 36234 CGAAAATCTGCAT 36246 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || || || |||| || |||||||||||||| || Sbjct 35748 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGGCCGTCCTCAAGCTGCTTGCCGGCAAA 35807 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 || | ||||||||||| | || | | |||||| || |||||||| ||||| Sbjct 35808 GATGAGACGCTGCTGGTCTGGGGGGATACCCTCCTTATCTTGGATCTTCTGCTTGA 35863 >seq1899 Length=11869 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || || || || || |||| ||||||||||||||||| || Sbjct 5522 CTCCTTCTGGATGTTGTAATCAGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAA 5581 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | || |||||||||| ||||||| ||||| | Sbjct 5582 GATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTGACGTT 5641 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | || ||| ||| || || || | |||||||| || || ||||| || || || Sbjct 5642 ATCGATGGTATCGGACGACTCGACCTCGAGGGTGATGGTCTTACCAGTCAGGGTCTTGAC 5701 Query 46582 AAAGATTTGCAT 46593 || || ||||| Sbjct 5702 GAAAATCTGCAT 5713 Score = 96.9 bits (106), Expect = 4e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| |||| || |||||||||||||| || Sbjct 5750 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAA 5809 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 || | |||||||||||| | || | | |||||| || |||||||| ||||| Sbjct 5810 GATGAGGCGCTGCTGGTCTGGGGGGATACCCTCCTTATCTTGGATCTTCTGCTTGA 5865 >seq1254 Length=67957 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || |||||||| | || || ||||||||||||||||| Sbjct 3352 CTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAA 3293 Query 46462 TATCAAGCGCTGCTGGTC 46479 || | |||||||||||| Sbjct 3292 GATGAGGCGCTGCTGGTC 3275 >seq1584 Length=118991 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || || |||||||| | || || |||||||||||||| || Sbjct 13678 CTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAA 13737 Query 46462 TATCAAGCGCTGCTGGTC 46479 |||| |||||||||||| Sbjct 13738 GATCAGGCGCTGCTGGTC 13755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565224537528240