Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mortierella_20alpina_20[genbank_20GCA_5F001021685.1_202015-06-08] 1,962 sequences; 36,305,198 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1237 104 2e-17 seq1899 102 6e-17 >seq1237 Length=85294 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| || || || || ||||| ||||| || || || || Sbjct 36246 ATGCAGATTTTCGTCAAGACCCTTACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCG 36187 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||| ||||| || ||| | || ||||| || Sbjct 36186 GACACCATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAGGGTATCCCTCCAGACCAG 36127 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || |||||||| || || || |||| || || | || ||||| Sbjct 36126 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCTGACTACAAT 36067 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 36066 ATTCAGAAGGAGTCGAC 36050 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||| | || || || || ||||| | || || || || || Sbjct 35711 ATGCAGATTTTCGTCAAGACCTTGACCGGCAAGACCATCACGTTGGAGGTGGAGTCTTCG 35652 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || || ||||| || || | || ||||| || Sbjct 35651 GACACCATTGACAATGTCAAGCAGAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAG 35592 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||| || || || |||| || || | || ||||| Sbjct 35591 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCTGACTACAAT 35532 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 35531 ATCCAGAAGGAGTCGAC 35515 >seq1899 Length=11869 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| || || || || ||||| ||||| || || || | Sbjct 5713 ATGCAGATTTTCGTCAAGACCCTGACTGGTAAGACCATCACCCTCGAGGTCGAGTCGTCC 5654 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | || || || ||| ||||| || || | || ||||| || Sbjct 5653 GATACCATCGATAACGTCAAGCAGAAGATTCAGGACAAGGAGGGCATCCCCCCAGACCAG 5594 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||| || || || |||| || || | ||||||||| Sbjct 5593 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCTGATTACAAC 5534 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || ||||| || | ||||| || Sbjct 5533 ATCCAGAAGGAGTCGACCCTCCATTTGGT 5505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338001517556696