Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mortierella_20alpina_20[genbank_20GCA_5F001021685.1_202015-06-08] 1,962 sequences; 36,305,198 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1253 152 1e-31 seq1237 143 6e-29 seq1899 104 6e-17 >seq1253 Length=67324 Score = 152 bits (168), Expect = 1e-31 Identities = 208/288 (72%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 7445 TATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATAA 7504 |||| ||||| |||| ||||| ||||| || |||||| |||||||||| | || | Sbjct 19004 TATACTTAATTTTTGCATTATTTTCAGGTATGATTGGTACTGCATTTTCTATGTTAATTA 19063 Query 7505 GGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGT-GGTAATAGCCAACTTTACAAC 7563 | ||||||||||| | || || ||| |||| | ||| || ||| | || || Sbjct 19064 GATTAGAATTAGCAGGGCCAGGAATACAA-TATTTACAAGGTGATCATCAATTATATAAT 19122 Query 7564 GTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATA 7623 || ||| |||| || ||||| ||| ||||||||||||| || |||||||| | | | || Sbjct 19123 GTAATTGTTACTGCTCATGCTTTTATTATGATTTTCTTCTTGGTTATGCCAGCTTTAATT 19182 Query 7624 GGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCA 7683 || ||||| || |||| || || || |||||||||||||| |||||||| ||||| Sbjct 19183 GGTGGTTTTGGTAATTTCTTAGTACCAGTAATGATTGGTGCTGTAGATATGGCATTTCCT 19242 Query 7684 AGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCTA 7731 || | || |||||| || || ||| |||| || | ||| || || Sbjct 19243 AGATTAAATAATATATCATTCTGGTTATTACCTCCAGCATTAATTTTA 19290 Score = 116 bits (128), Expect = 9e-21 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 ||||||||||||||||| | ||| ||||| |||||||||||| || ||||||||||| Sbjct 20832 AATGGTAATTTATGCATTGTTAACCCAGGAGCTCTCATATTAATAATAGTAGTAATAAAA 20773 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || ||| |||| | ||| || || |||||||||||||| || || |||||||| Sbjct 20772 TTAGAAGCACCTAACATTGAACTAATCCCAGCAAGATGTAAACTGAAGATAGCTAAATCA 20713 Query 371485 ACGGAACCGCCGGAGTGAG 371503 || ||||| || || |||| Sbjct 20712 ACAGAACCACCAGAATGAG 20694 >seq1237 Length=85294 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| || || || || || |||| |||||| || | | || | || || Sbjct 35500 AGGACCAAGTGAAGGGTCGACTCCTTCTGGATATTGTAGTCAGAGAGGGTACGGCCGTCC 35559 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || || || ||||| || ||||| || ||||||||| Sbjct 35560 TCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCT 35619 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||| ||| || |||||||| || | ||||| || |||||||| ||| Sbjct 35620 TGGATCTTCTGCTTGACATTGTCAATGGTGTCCGAAGACTCCACCTCCAACGTGATGGTC 35679 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || | ||| | ||||| Sbjct 35680 TTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 35711 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| || || || || || || | |||||| || | | || | || || Sbjct 36035 AGGACCAAGTGAAGGGTCGACTCCTTCTGAATATTGTAGTCAGAGAGGGTACGGCCGTCC 36094 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| || || ||||| ||||||||| Sbjct 36095 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGGATACCCTCCTTGTCT 36154 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||||| || || |||||||| || | || || || | ||||| ||| Sbjct 36155 TGAATCTTCTGCTTGACGTTGTCAATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTC 36214 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | ||| | ||||| Sbjct 36215 TTGCCGGTAAGGGTCTTGACGAAAATCTGCAT 36246 Score = 95.1 bits (104), Expect = 3e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| || || || || || |||| ||||| || | | || | || || Sbjct 35728 AGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGGCCGTCC 35787 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || || || ||||| || || ||||| ||||| ||| Sbjct 35788 TCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGGATACCCTCCTTATCT 35847 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGA 225656 |||||||| ||||| || ||||||||||| || Sbjct 35848 TGGATCTTCTGCTTGACGTTGTCGATGGTGTCCGA 35882 >seq1899 Length=11869 Score = 104 bits (114), Expect = 6e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| |||||||| || || |||| ||||| || | | || | || || Sbjct 5730 AGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 5789 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || || || ||||| || || ||||| ||||| ||| Sbjct 5790 TCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCTGGGGGGATACCCTCCTTATCT 5849 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGA 225656 |||||||| ||||| || ||||||||||| || Sbjct 5850 TGGATCTTCTGCTTGACGTTGTCGATGGTGTCCGA 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192501222001628