Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mortierella_20alpina_20[genbank_20GCA_5F001021685.1_202015-06-08] 1,962 sequences; 36,305,198 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1939 228 1e-54 seq1263 120 4e-22 seq1142 118 2e-21 >seq1939 Length=69097 Score = 228 bits (252), Expect = 1e-54 Identities = 478/705 (68%), Gaps = 8/705 (1%) Strand=Plus/Plus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 ||||| || || ||||||||||| | | || || ||| || || | || | Sbjct 2212 TCAAACTCCTCGCCCCAAACATCTTGAAGGCCGGGGGCCTCAGCAGGGCAGAACAGACTC 2271 Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639 || || |||| ||| | || || ||||| || ||||| || ||||| || ||| || Sbjct 2272 CAGTCTCCATTTTCTTCAATGCGCTTCATGAACAGATCGGGGATCCAGAGGGCATAGAAC 2331 Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATA 76699 ||||| |||| | ||||| ||||| || ||||| ||| || | ||||| | Sbjct 2332 AGATCACGGGCACGGGACTCTTCCTTTCCAGTGTTCTTGCGAAGGTCCAAAAACTCAAAG 2391 Query 76700 ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCC 76759 | || | ||||| || || || || || || | |||| || || || || || ||| Sbjct 2392 ACGTCTGCGTGCCAAGGCTCGAGGTACATGGCGAACGCACCTGGGCGCTTGTTGCCACCC 2451 Query 76760 TGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGAT 76819 ||||| | ||| | ||||||||| || || || | | ||| ||||||| ||| || || Sbjct 2452 TGATCGACATAACGGGCAGTGTTGTTGTACACGCGAAGCATAGGAATAAGGCCATTGGA- 2510 Query 76820 GTA-CCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCC 76878 ||| || || ||||||| ||| || ||| | || ||||| || ||| || || Sbjct 2511 GTATCCGTTGGTTCCAGCAATGTATGATCCCGAGGCGCGAATGTTGTGAATGTTCAGACC 2570 Query 76879 TATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTC 76938 |||||||| ||| | || ||||| | || ||| ||||| ||||||||||| ||||| Sbjct 2571 GATTCCTCCAGCCGTCTTGGAGATCATGGCGCAGGTCTTCAACGTGTCATAGATACCCTC 2630 Query 76939 TATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 76998 || ||| ||| ||||| | || | || ||||| ||||| || | ||||| Sbjct 2631 GATCGAATCGTCCTTCATGGTCAGCAAGAAGCAGCTCGACATCTGGGGTCTGGGGGTTCC 2690 Query 76999 TGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGA-AAGTAGATTGTATG 77057 || ||||| | || || || ||||||||||| | ||||| || | |||| ||||| | Sbjct 2691 GGCGTTAAAGAGAGTGGGCGAAGCATGAGTGAAGAACTTTTCCGACATGTAG-TTGTAGG 2749 Query 77058 TTTCAATAACTGCTTCTATATCCCATTG--ATGAATTCCTACAGCGACACGCATCAACAT 77115 | || ||| | ||||| | ||| | || ||||| |||| ||||||||||||||| Sbjct 2750 TCTCGATAGC--CTTCTCGACATCATCGCCGTGGATTCCGACAGAGACACGCATCAACAT 2807 Query 77116 ATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGT 77175 ||||||||||| ||| | ||| | || | || ||| || ||||| || Sbjct 2808 ATGCTGAGGTCTCTCTGCGACCTTGCCGTCGATGCGGAGCAGGTACGAGCGCTCCAAGGT 2867 Query 77176 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 || || ||||| |||||||| ||||| | ||||| || || Sbjct 2868 CTTGAATCCAAAGTAGTTGTAGTTGAAGTCGCGGTCGTAGATGAT 2912 >seq1263 Length=39644 Score = 120 bits (132), Expect = 4e-22 Identities = 201/290 (69%), Gaps = 3/290 (1%) Strand=Plus/Plus Query 46891 TCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCC 46950 || || || ||||| || || || || ||||| || || || | || ||||| Sbjct 13487 TCCTTGACGTATGTGTCAATCAAGAGCGAGTACATCTCAGAGTGGACATTCTCAATCATG 13546 Query 46951 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCA 47010 ||||| ||||||||||| |||||||| || | ||||| ||||| | | ||||| ||| Sbjct 13547 ATCTGGAATCCGTAAAAGCATCTTGCCTCTGGGATCTGGACCTCGTTCGAGAATCGCTCA 13606 Query 47011 GACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATA 47070 ||| ||||| || || || || ||||| ||||| || || |||| | || | | Sbjct 13607 AGCAAGTTCTCGTTGACAATGCCGTCACTGGCAGCGAAGAAAGCCAGGATGTGCGAGACA 13666 Query 47071 AAATATTTTTCATCGGTAGTCA---GTTTATTCCAGTCATTGATATCTTTTGATATATCT 47127 || || || |||| || || | || | |||||| | || || || || | ||| Sbjct 13667 AAGAATCGCTCGTCGGCAGACATGCGGTTCTCCCAGTCGTGCATGTCCTTGGAGAGATCG 13726 Query 47128 ACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCA 47177 || |||||||| |||||||| || ||||| || || || ||||| | ||| Sbjct 13727 ACCTCTTCAGCAGTCCAGAAGGAGGCCTCAGCCTTCTTGTACATCTGCCA 13776 >seq1142 Length=49763 Score = 118 bits (130), Expect = 2e-21 Identities = 242/360 (67%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 76775 GCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCA 76834 ||||||| |||| | || | || ||| || || || ||||| || | ||||| |||||| Sbjct 35762 GCAGTGTCATTAAAGACGCGCAGCATGGGGATGATACCGTTCGAGTTTCCATTCGTTCCA 35703 Query 76835 GAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATT 76894 | ||| ||| || | |||||||| || | | | ||| | || || || Sbjct 35702 GCAATGTAAGAGCCTGAGGCACGAATTTTTTGGAAACTAACGCCAACACCGCCGGCTGAC 35643 Query 76895 TTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATC 76954 || ||||| | | ||| |||| ||||| ||||| ||||| |||||||| || | Sbjct 35642 TTTGAGATCAAGGAGCAGGTCTTCAGAGTGTCGTAGATACCCTCGATACTATCGTCTTGC 35583 Query 76955 ATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTA 77014 || | | ||| ||||| || ||||| || || | |||||| ||||| |||| ||| Sbjct 35582 ATCTGGACAAGGAAACAACTCGACATCTGGGGACGCGGAGTTCCAGCATTGAACAGTGTC 35523 Query 77015 GGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCT 77074 || | || || ||||| | || ||||| | | | |||||| |||||| | || || Sbjct 35522 GGGGTAGCGTGCGTGAAGTACTTCTCAGACATGAAGTGGTATGTCTCAATAGCAGCCTCA 35463 Query 77075 ATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACA 77134 || || | | || || || | | || | ||| | |||||||||||| || || ||| Sbjct 35462 ATGTCGCGTCCGTGGATGCCGATCGAAACTCTCATAATCATATGCTGAGGACGCTCGACA 35403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712916915283840