Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mortierella_20alpina_20[genbank_20GCA_5F001021685.1_202015-06-08] 1,962 sequences; 36,305,198 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1899 150 4e-31 seq1237 141 2e-28 seq1254 93.3 1e-13 >seq1899 Length=11869 Score = 150 bits (166), Expect = 4e-31 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || || || || || |||||||||||||| || || || Sbjct 5710 CAGATTTTCGTCAAGACCCTGACTGGTAAGACCATCACCCTCGAGGTCGAGTCGTCCGAT 5651 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| || |||||||||||||| || || ||||| || |||||||| Sbjct 5650 ACCATCGATAACGTCAAGCAGAAGATTCAGGACAAGGAGGGCATCCCCCCAGACCAGCAG 5591 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || |||||||| || || | || || | ||||| ||| || Sbjct 5590 CGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCTGATTACAACATC 5531 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || || ||| Sbjct 5530 CAGAAGGAGTCGACCCTCCAT 5510 Score = 111 bits (122), Expect = 4e-19 Identities = 128/171 (75%), Gaps = 1/171 (1%) Strand=Plus/Minus Query 177958 TCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACA 178017 ||||||||||||| || || ||||||||||| |||||||| || ||||| || || | Sbjct 5904 TCACCCTCGAGGTCGAGTCGTCGGACACCATCGACAACGTCAAGCAGAAGATCCAAGATA 5845 Query 178018 AAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATG 178077 | || || ||||| || |||||||| || || ||||| ||||| || ||||| || || | Sbjct 5844 AGGAGGGTATCCCCCCAGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGACG 5785 Query 178078 GAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 | | || || | || || ||| |||| || || || || || || |||| Sbjct 5784 GCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCCACTCTTCA-CTTG 5735 Score = 86.0 bits (94), Expect = 2e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || ||||| || || || |||||||||||||| || || ||| Sbjct 6017 CAAATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGAC 5958 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCC 178033 |||||||| |||||||| || ||||| || || || || || ||||| || Sbjct 5957 ACCATCGACAACGTCAAGCAGAAGATCCAAGATAAGGAGGGTATCCCCCC 5908 >seq1237 Length=85294 Score = 141 bits (156), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || || || || || |||||||||||||| || || ||| Sbjct 36243 CAGATTTTCGTCAAGACCCTTACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGAC 36184 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| || |||||||| ||||| || || |||||||| |||||||| Sbjct 36183 ACCATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAGGGTATCCCTCCAGACCAGCAG 36124 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | || || | || || || | Sbjct 36123 CGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCTGACTACAATATT 36064 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 36063 CAGAAGGAGTCGACCCTTCA-CTTG 36040 Score = 111 bits (122), Expect = 4e-19 Identities = 128/171 (75%), Gaps = 1/171 (1%) Strand=Plus/Minus Query 177958 TCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACA 178017 ||||||||||||| || || ||||||||||| |||||||| || ||||| || || | Sbjct 35902 TCACCCTCGAGGTCGAGTCGTCGGACACCATCGACAACGTCAAGCAGAAGATCCAAGATA 35843 Query 178018 AAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATG 178077 | || || ||||| || |||||||| || || ||||| ||||| || ||||| || || | Sbjct 35842 AGGAGGGTATCCCCCCAGACCAGCAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACG 35783 Query 178078 GAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 | | || || | || || ||| |||| || || || || || || |||| Sbjct 35782 GCCGTACCCTCTCTGACTACAACATCCAGAAGGAGTCGACCCTTCA-CTTG 35733 >seq1254 Length=67957 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/110 (79%), Gaps = 3/110 (3%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||| || || || || ||||| || ||||||||||||||||| Sbjct 2755 AAAATGC---AGATTTTCGTTAAGACCCTTACCGGAAAGACCATCACCCTCGAGGTGGAG 2811 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 || |||||||| || |||||||| || ||||| |||||||| || || Sbjct 2812 TCTTCCGACACCATTGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGG 2861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203700940454628