Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1343 102 2e-16 >seq1343 Length=682584 Score = 102 bits (112), Expect = 2e-16 Identities = 138/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 61092 GCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGACTCCG 61151 || || ||| |||||| ||||| ||||||||||||||||| |||| |||| || || Sbjct 152326 GCTTCTACAAGTGAACTTTATGGTAAAGTTCAAGAAATTCCACAAAATGAAAAAACACCA 152267 Query 61152 TTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTTGTA-AAAA 61210 || ||||| ||| || |||||||| || ||| |||| || || |||| ||||| || Sbjct 152266 TTCTATCCACGTTCTCCTTATGGTGTAGCTAAATTATATGCCTATTGGA-TTGTAGTTAA 152208 Query 61211 TTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAATCACGAGAGTCC 61270 ||| || || | ||| |||||| |||||| || | || ||||| || ||||| Sbjct 152207 TTATCGTGAAGCCTATAATATGTTTTCATGTAATGGTATATTATTTAATCATGAAAGTCC 152148 Query 61271 CAATAGAGGT 61280 | |||||| Sbjct 152147 AAGAAGAGGT 152138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057799346419970