Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_000866.4 Length=168903 Score E Sequences producing significant alignments: (Bits) Value seq413 86.0 7e-12 seq236 82.4 8e-11 >seq413 Length=437716 Score = 86.0 bits (94), Expect = 7e-12 Identities = 130/184 (71%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 63556 ATTACAAACTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 63615 |||||| ||||| || |||||||| ||||| || | || || || ||||| | Sbjct 218064 ATTACATCTTTTCATGGAAAGTACGAGCAATAACTTCTCTTTGTTGATCTGGAGTTA--- 218008 Query 63616 AGTTAA---AGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCG 63672 | |||| || ||| |||||||| || ||||| || || || | ||||| ||||| | Sbjct 218007 ATTTAACAAAGTTAACGGCATAACCAGAGACACGAATAGTAAGATTTGGATAGTTTTCTG 217948 Query 63673 GATGCTTAACTGCATCTTCCAGAGTTTCATGACGCAGAACGTTAACGTTCAGGTGTTGAC 63732 | || | |||||||| | ||||||| | |||||||||||||| || || ||| Sbjct 217947 GGTGAGCCATGGCATCTTCTAAAGTTTCACGGTTGAGAACGTTAACGTTAAGATGGTGAG 217888 Query 63733 CACC 63736 |||| Sbjct 217887 CACC 217884 >seq236 Length=489515 Score = 82.4 bits (90), Expect = 8e-11 Identities = 119/167 (71%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 63573 AAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAA---AGCGAACT 63629 ||||||||||| ||||| || || |||| ||||| | | |||| || || Sbjct 435833 AAGGTACGAGCAATAACTTCCTTTTGTTGTTGTGGAGTTA---ACTTAACAAAGTTTACA 435777 Query 63630 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 63689 ||||||||||| ||||| || || || | ||||| ||||| ||||| | ||||||| Sbjct 435776 GCATAACCGGAAACACGAATAGTAAGATTTGGATAGTTTTCTGGATGAGCCATTGCATCT 435717 Query 63690 TCCAGAGTTTCATGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 63736 || | ||||||| | ||||| ||||| || || || ||| |||| Sbjct 435716 TCTAAAGTTTCACGCTTAAGAACATTAACATTAAGATGGTGAGCACC 435670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540349313528120