Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq413 114 9e-21 >seq413 Length=437716 Score = 114 bits (126), Expect = 9e-21 Identities = 232/342 (68%), Gaps = 2/342 (1%) Strand=Plus/Minus Query 97290 ATTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTAT 97349 |||||| ||| |||| | ||||||||||| ||||| || | || ||| ||| | Sbjct 66107 ATTCCATGCAGACATAATAATTCTTCTATCAGTTGGCTTATTAATAATTTTATCAATAAC 66048 Query 97350 CTGCTTTAATTGATCAACGCCTTCTCCACCATAAT-TGTGCTTAAGACCTTGATATTCTG 97408 | | ||||| |||| ||| ||||| |||| | | | || ||||| | Sbjct 66047 ATCACGAAGCTGATCTTTTCCTTGTCCTGTATAATCTGTG-TGACAATCTATATATTTAG 65989 Query 97409 CTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCAC 97468 |||||||||| | |||||| | ||||| | ||||| | || ||||||||||| ||| Sbjct 65988 CTCCAAAATGACGCCATTGCCAACCATATATTGGTCCTAAATCACCTTCTTCTCTTTCAG 65929 Query 97469 AGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACACCAG 97528 ||||| | ||||| | | | | ||| ||||| | ||||| || || ||||| Sbjct 65928 TTAAACCTATTTTATCAAGAAATTCACGAGAACCATTACCTTCCCATATATGAACACCTT 65869 Query 97529 ATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAA 97588 | || || ||| | |||||| ||||| | ||||| || ||||| || ||| Sbjct 65868 TTTTTGATAGAATTTTTCCATCAGTATCACCTCTTAAGAACCAAAATAATTCCTCTGCAA 65809 Query 97589 CACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAAAT 97630 ||||||| |||| ||||| || |||||||| || || |||| Sbjct 65808 CACCTCTAAAAAAAACTCTTTTCGTTGTTAATAGTGGGAAAT 65767 Score = 107 bits (118), Expect = 1e-18 Identities = 147/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 97001 TTAGTGTTGGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGAT 97060 ||| | ||||||| || || ||| || | | || ||| ||||| ||||| |||| Sbjct 66604 TTAATTTTGGGAATGGTCTTGGAACTCTTTTTATTTGTTCTTGTAGAGCTTCAATATGAT 66545 Query 97061 TCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATC-AGTG 97119 | |||||| || | ||| || | | |||||||| |||||| ||| || | | Sbjct 66544 TATTATAAATATGTGTATCACCCATATCATGAATAAAAGTTCCAGGTT-TAATTCCAATT 66486 Query 97120 ACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGT 97179 ||||| || || ||||||||||||| |||||| |||||||| |||||||| || |||| | Sbjct 66485 ACATGAGCAATTATACAAGTTAATAAAGAATAACTAGCAATATTAAAAGGAACACCTAAT 66426 Query 97180 CCCATATCAGCTGATCTTTGATA 97202 || | |||| ||||| ||||| Sbjct 66425 CCAACATCACAAGATCTCTGATA 66403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346776312123830