Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq952 100 2e-16 seq1521 82.4 7e-11 >seq952 Length=293713 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||| || ||||| | || | |||| || | ||||| || |||||||||||||||||| Sbjct 167336 ACCACCACGTAAACG-AAGAACAAGATGTAAAGTAGATTCCTTTTGAATGTTGTAATCGG 167278 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||| || | || || || ||| |||| ||||| || || || || | Sbjct 167277 AAAGAGTACGACCATCTTCTAATTGCTTACCGGCGAAGATAAGACGTTGTTGGTCTGGTG 167218 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||| ||| ||| || ||| || | ||| | ||||| | | |||| Sbjct 167217 GGATACCTTCCTTATCTTGAATCTTAGCTTTGACATTTTCAATAGTGTCGGAGGATTCGA 167158 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | ||| | || || || || || ||||| |||||||| ||||| Sbjct 167157 CCTCAAGGGTAATAGTCTTACCCGTAAGGGTTTTGACAAAAATTTGCAT 167109 >seq1521 Length=627264 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||| || ||||| | || | |||| || | ||||| || ||||||||||||||||| Sbjct 324351 ACCACCACGTAAACG-AAGAACAAGATGTAAAGTAGATTCCTTTTGAATGTTGTAATCAG 324293 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||| || | || || || || |||| ||||| || || || || | Sbjct 324292 AAAGAGTACGACCATCTTCTAATTGCTTACCGGCAAAGATAAGACGTTGTTGGTCTGGTG 324233 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||| ||| || || ||| || | ||| | ||||| | | || | Sbjct 324232 GAATACCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCAATAGTGTCGGAGGATTCAA 324173 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | ||| | ||| || || || || ||||| ||||| || ||||| Sbjct 324172 CCTCAAGGGTAATCGTCTTACCCGTAAGGGTTTTGACAAAGATTTGCAT 324124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433820782386748