Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1232 96.9 4e-15 seq1521 89.7 6e-13 seq952 84.2 3e-11 >seq1232 Length=735369 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||||||||| ||||||| ||||| | | || |||| ||||||||||| || Sbjct 61656 TCCTTTTGAATATTATAATCAGAAAGAGTTCTACCATCTTCTAATTGCTTACCAGCAAAA 61597 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || || || || ||||| | || | | ||||| | | ||| |||| | ||||| | Sbjct 61596 ATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTTAT-CTTGAATTTTAGCTTTGACATT 61538 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | || || ||||| || || | || |||||||| || |||| |||||||| Sbjct 61537 TTCAATAGTATCAGAAGATTCAACTTCAAGAGTAATGGTTTTACCAGTTAAAGTCTTTAC 61478 Query 43172 AAAGATTTGCATTTT 43186 |||||||||||||| Sbjct 61477 GAAGATTTGCATTTT 61463 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||||||||||||||||| ||||| | | || |||| || |||||||| || Sbjct 63024 TCCTTTTGAATATTGTAATCAGAAAGAGTTCTACCATCTTCTAATTGTTTACCAGCAAAG 62965 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || || || || ||||| | || | | ||||| | | ||| |||| | ||||| | Sbjct 62964 ATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTTAT-CTTGAATTTTAGCTTTGACATT 62906 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | || || ||||| || || | || |||||||| || |||| ||||| || Sbjct 62905 TTCAATAGTATCAGAAGATTCAACTTCAAGAGTAATGGTTTTACCAGTTAAAGTCTTAAC 62846 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 62845 GAAGATTTGCAT 62834 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||||||||| |||||||||| ||||| | | || |||| ||||||||||| || Sbjct 62112 TCCTTTTGAATGTTGTAATCAGAAAGAGTTCTACCATCTTCTAATTGCTTACCAGCAAAA 62053 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || || || || ||||| | || | | ||||| | | ||| |||| | ||||| | Sbjct 62052 ATAAGACGTTGTTGGTCTGGAGGGATACCTTCCTTAT-CTTGAATTTTAGCTTTGACATT 61994 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| ||||| || || | || || || || || |||| ||||| || Sbjct 61993 TTCAATGGTGTCAGAAGATTCAACTTCAAGAGTAATAGTCTTACCAGTTAAAGTCTTAAC 61934 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 61933 GAAGATTTGCAT 61922 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||||||||||||||||| ||||| | | || |||| |||||||| || || Sbjct 62340 TCCTTTTGAATATTGTAATCAGAAAGAGTTCTACCATCTTCTAATTGCTTACCGGCAAAA 62281 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || || || || ||||| | || | | ||||| | | ||| |||| | ||||| | Sbjct 62280 ATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTTAT-CTTGAATTTTAGCTTTGACATT 62222 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | || || ||||| || || | || ||||| || || |||| ||||| || Sbjct 62221 TTCAATAGTATCAGAAGATTCAACTTCAAGAGTAATGGTCTTACCAGTTAAAGTCTTAAC 62162 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 62161 GAAGATTTGCAT 62150 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||||||||| ||||||| ||||| | | || |||| ||||||||||| || Sbjct 62568 TCCTTTTGAATATTATAATCAGAAAGAGTTCTACCATCTTCTAATTGCTTACCAGCAAAA 62509 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || || || || ||||| | || | | ||||| | | ||| |||| | ||||| | Sbjct 62508 ATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTTAT-CTTGAATTTTAGCTTTGACATT 62450 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | || || ||||| || || | || ||||| || || |||| ||||| || Sbjct 62449 TTCAATAGTATCAGAAGATTCAACTTCAAGAGTAATGGTCTTACCAGTTAATGTCTTAAC 62390 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 62389 GAAGATTTGCAT 62378 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||||||||||||||||| ||||| | | || |||| || |||||||| || Sbjct 62796 TCCTTTTGAATATTGTAATCAGAAAGAGTTCTACCATCTTCTAATTGTTTACCAGCAAAG 62737 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || || || || ||||| | || | | ||||| | | ||| |||| | ||||| | Sbjct 62736 ATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTTAT-CTTGAATTTTAGCTTTGACATT 62678 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | || || ||||| || || | || ||||| || || |||| ||||| || Sbjct 62677 TTCAATAGTATCAGAAGATTCAACTTCAAGAGTAATGGTCTTACCAGTTAATGTCTTAAC 62618 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 62617 GAAGATTTGCAT 62606 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||||||||| |||||||||| ||||| | | || |||| || |||||||| || Sbjct 63252 TCCTTTTGAATGTTGTAATCAGAAAGAGTTCTACCATCTTCTAATTGTTTACCAGCAAAA 63193 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || || || || ||||| | || | | ||||| | | ||| |||| | ||||| | Sbjct 63192 ATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTTAT-CTTGAATTTTAGCTTTGACATT 63134 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | || || ||||| || || | || |||||||| || |||| ||||| || Sbjct 63133 TTCAATAGTATCAGAAGATTCAACTTCAAGAGTAATGGTTTTACCAGTTAAAGTCTTAAC 63074 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 63073 GAAGATTTGCAT 63062 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||||||||| |||||||||| ||||| | | || |||| ||||||||||| || Sbjct 63480 TCCTTTTGAATGTTGTAATCAGAAAGAGTTCTACCATCTTCTAATTGCTTACCAGCAAAA 63421 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || || || || ||||| | || | | ||||| | | ||| |||| | ||||| | Sbjct 63420 ATAAGACGTTGTTGGTCTGGAGGGATACCTTCCTTAT-CTTGAATTTTAGCTTTGACATT 63362 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| ||||| || || | || || || || || |||| ||||| || Sbjct 63361 TTCAATGGTGTCAGAAGATTCAACTTCAAGAGTAATAGTCTTACCAGTTAAAGTCTTAAC 63302 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 63301 GAAGATTTGCAT 63290 >seq1521 Length=627264 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || | |||||| | || | ||| || || ||||||||||| |||||||||| Sbjct 324350 CCACCACGTAAACGAAGAACAAGATGTAAAGTAGATTCCTTTTGAATGTTGTAATCAGAA 324291 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || |||| |||||||| || || || || || || ||||| | || Sbjct 324290 AGAGTACGACCATCTTCTAATTGCTTACCGGCAAAGATAAGACGTTGTTGGTCTGGTGGA 324231 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | ||||| || ||| || ||||| | | | |||||| ||||| || Sbjct 324230 ATACCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCAATAGTGTCGGAGGATTCAACC 324171 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || || || || ||||| || || || |||||||||||||| Sbjct 324170 TCAAGGGTAATCGTCTTACCCGTAAGGGTTTTGACAAAGATTTGCAT 324124 >seq952 Length=293713 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || | |||||| | || | ||| || || ||||||||||| |||||||| | Sbjct 167335 CCACCACGTAAACGAAGAACAAGATGTAAAGTAGATTCCTTTTGAATGTTGTAATCGGAA 167276 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || |||| |||||||| ||||| || || || || ||||| | || Sbjct 167275 AGAGTACGACCATCTTCTAATTGCTTACCGGCGAAGATAAGACGTTGTTGGTCTGGTGGG 167216 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||| | | ||| | || | ||||| | | | |||||| ||||| || Sbjct 167215 ATACCTTCCTTAT-CTTGAATCTTAGCTTTGACATTTTCAATAGTGTCGGAGGATTCGAC 167157 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || || || || ||||| || || || ||||| |||||||| Sbjct 167156 CTCAAGGGTAATAGTCTTACCCGTAAGGGTTTTGACAAAAATTTGCAT 167109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571804598297320