Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq413 93.3 3e-14 >seq413 Length=437716 Score = 93.3 bits (102), Expect = 3e-14 Identities = 231/349 (66%), Gaps = 19/349 (5%) Strand=Plus/Plus Query 20043 ATTTCCCT-TATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTAT 20101 ||||||| ||||||| |||||| | || |||| | ||| |||| || || ||||| | Sbjct 65767 ATTTCCCACTATTAACAACGAAAAGAGTTTTTTTTAGAGGTGTTGCAGAGGAATTATTTT 65826 Query 20102 GGTTTATTAAAGG--------ATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAA 20153 |||| | | ||| || | |||||||| | | ||||||| ||| | Sbjct 65827 GGTTCTTAAGAGGTGATACTGATGGAAAAATTCTATCAA--------AAAAAGGTGTTCA 65878 Query 20154 GATTTGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACA-ACCGTC 20212 || ||| | |||| ||| ||||| | | | ||| | ||| || | | Sbjct 65879 TATATGGGAAGGTAATGGTTCTCGTGAATTTCTTGATAA-AATAGGTTTAACTGAAAGAG 65937 Query 20213 AAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATG 20272 |||| || ||||| || || | ||||| | |||||| | |||||||||||| ||||| Sbjct 65938 AAGAAGGTGATTTAGGACCAATATATGGTTGGCAATGGCGTCATTTTGGAGCTAAATATA 65997 Query 20273 TTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATT 20332 | || ||||| ||||| ||||||||| |||||| | | |||||||| || Sbjct 65998 TAGATTGTCACACAGATTATACAGGACAAGGAAAAGATCAGCTTCGTGATGTTATTGATA 66057 Query 20333 TAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAA 20381 ||||| | || |||| || |||||||||||| | | || ||||| Sbjct 66058 AAATTATTAATAAGCCAACTGATAGAAGAATTATTATGTCTGCATGGAA 66106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399175150464955