Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq413 86.0 9e-12 >seq413 Length=437716 Score = 86.0 bits (94), Expect = 9e-12 Identities = 142/199 (71%), Gaps = 7/199 (4%) Strand=Plus/Plus Query 104104 AATAATGAAGAAAAACAATATTTAAATTTATTAGAAAAAGTTCTTTTTCAAGGCGAAGAT 104163 ||| | |||||| |||||||||||||||| || ||||| || | | | || | |||| Sbjct 65634 AATGAGGAAGAATTACAATATTTAAATTTAATAAAAAAAATTATAGATGAGGGAG-AGAT 65692 Query 104164 -CGTGACGATAGAACAGGAATTGGAACTAAAAATGTATTTGG---AGAACAATTAAAATT 104219 | | ||||||||||| | ||||| ||| | ||||||| | | | ||||| ||| Sbjct 65693 GAGAAATGATAGAACAGGTACAGGAACAAAAGCTATATTTGGACCAAATCCATTAAGATT 65752 Query 104220 TAATTTAAGAACATC-TTTTCCGTTACTAACTACaaaaaaaGTTTTTTGGAAAGGAGTTG 104278 |||| || ||| ||| || || |||| || |||| |||||||| | ||| |||| Sbjct 65753 CTCATTAA-AAGATCATTTCCCACTATTAACAACGAAAAGAGTTTTTTTTAGAGGTGTTG 65811 Query 104279 TAGAAGAACTCTTATGGTT 104297 ||| ||| | || ||||| Sbjct 65812 CAGAGGAATTATTTTGGTT 65830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679798942720080