Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq585 95.1 1e-14 seq1265 82.4 6e-11 seq502 82.4 6e-11 >seq585 Length=8358 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || ||||||||||| ||||| || || || || || | || || ||||| Sbjct 5043 ATGCAAATCTTTGTTAAAACTTTAACTGGTAAGACCATTACTCTTGAAGTTGAATCCTCT 5102 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | | |||| |||||| | |||||| | |||||||| | || ||||| Sbjct 5103 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGACCAA 5162 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||| | || | ||| || |||||| | |||||| | ||| | ||||||| Sbjct 5163 CAACGTCTTATTTTTGCTGGTAAACAATTAGAAGATGGAAGAACTCTTTCTGATTACAAT 5222 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACG 25046 || || ||||| |||| ||||| ||||| ||||| Sbjct 5223 ATTCAAAAAGAATCCACTCTTCACTTAGTCTTACG 5257 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || ||||||||||| ||||| || || || || || | || || ||||| Sbjct 4587 ATGCAAATCTTTGTTAAAACTTTAACTGGTAAGACCATTACTCTTGAAGTTGAATCCTCT 4646 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | | |||| |||||| | |||||| | |||||||| | || ||||| Sbjct 4647 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGACCAA 4706 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||| | || | ||| || |||||| | |||||| | ||| | ||||||| Sbjct 4707 CAACGTCTTATTTTTGCTGGTAAACAATTAGAAGATGGAAGAACTCTTTCTGATTACAAT 4766 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || || ||||| | || ||||| ||||| ||||| | || || ||| Sbjct 4767 ATTCAAAAAGAATCTACTCTTCACTTAGTTTTACGTCTTCGTGGTGGT 4814 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || ||||||||||| ||||| || || || || || | || || ||||| Sbjct 4131 ATGCAAATCTTTGTTAAAACTTTAACTGGTAAGACCATTACTCTTGAAGTTGAATCTTCT 4190 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | |||| ||| || | ||||| | |||||||| | || ||||| Sbjct 4191 GACACAATTGAAAATGTCAAAGCTAAAATCCAAGATAAAGAAGGTATTCCACCAGACCAA 4250 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||| | || | ||| || |||||| | |||||| | ||| | ||||||| Sbjct 4251 CAACGTCTTATTTTTGCTGGTAAACAATTAGAAGATGGAAGAACTCTTTCTGATTACAAT 4310 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || || ||||| |||| ||||| ||||| ||||| | || || ||| Sbjct 4311 ATTCAAAAAGAATCCACTCTTCACTTAGTTTTACGTCTTCGTGGTGGT 4358 >seq1265 Length=1280584 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || ||||| || || ||||| || || || || ||| | || || ||||| Sbjct 265157 ATGCAAATTTTTGTCAAGACTTTAACTGGAAAGACCATTACCCTTGAAGTTGAATCTTCT 265098 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | |||| ||| |||| || ||| | |||||||| | || || || Sbjct 265097 GATACCATTGAAAATGTCAAGGCCAAGATTCAAGATAAAGAAGGTATTCCACCAGATCAA 265038 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||| | || | ||| || |||||| | |||||| | ||| | ||||||| Sbjct 265037 CAACGTCTTATTTTTGCAGGAAAACAATTAGAAGATGGAAGAACTCTTTCTGATTACAAT 264978 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || || ||||| |||| ||||||||||| ||||| | || || ||| Sbjct 264977 ATTCAAAAAGAATCCACTCTTCATTTAGTTTTACGTCTTCGTGGTGGT 264930 >seq502 Length=415512 Score = 82.4 bits (90), Expect = 6e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || || || |||||| | || || || || |||||| | || || || || | Sbjct 365338 ATGCAAATTTTCGTCAAAACCCTTACTGGAAAGACTATAACCCTTGAGGTTGAGTCTTCC 365397 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||||| | | | ||||||| | || ||| | ||| ||||| | || |||||| Sbjct 365398 GACAGTATTGTCAATGTTAAGAACAAGATTCAAGAAAAGGAAGGTATTCCACCTGACCAA 365457 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||||||||||| | || || |||||| | |||||| || ||| | ||||||| | Sbjct 365458 CAACGTTTAATTTTCGCCGGTAAACAATTAGAAGATGACAGAACTCTTTCTGATTACAAC 365517 Query 25012 ATACAGAA 25019 || || || Sbjct 365518 ATTCAAAA 365525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418294726592480