Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq413 87.8 4e-12 >seq413 Length=437716 Score = 87.8 bits (96), Expect = 4e-12 Identities = 310/478 (65%), Gaps = 10/478 (2%) Strand=Plus/Plus Query 35090 GAGGGAGAACATCAATATTTGAACCTAGTCAGGGAGATCCTAGAAAGAGGAGTGAAGAAG 35149 |||| |||| |||||||| || || | | | || |||| |||| || || Sbjct 65637 GAGGAAGAATTACAATATTTAAATTTAATAAAAAAAATTATAGATGAGGGAGAGATGAGA 65696 Query 35150 GACGATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCCA---AATGAGGTTCTCT 35206 | |||||||| || |||||||| | | || |||||||| | | | || ||||| Sbjct 65697 AATGATAGAACAGGTACAGGAACAAAAGCTATATTTGGACCAAATCCATTAAGATTCTCA 65756 Query 35207 CTTCGAGACGACACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTG 35266 | ||| | | | ||| | | || || || | | |||| | ||||| |||| Sbjct 65757 TTAAAAGATCA---TTTCCCACTATTAACAACGAAAAGAGTTTTTTTTAGAGGTGTTGCA 65813 Query 35267 GAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAAG 35326 || ||| | | |||||| | || || |||| || | ||| | | ||| || | | Sbjct 65814 GAGGAATTATTTTGGTTCTTAAGAGGTGATACTGATGGAAAA-ATTCTATCAAAAAAAGG 65872 Query 35327 A-TACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGA 35385 | || || ||| | | |||||| || || |||||| | || | | ||| ||| || Sbjct 65873 TGTTCATATATGGGAAGGTAATGGTTCTCGTGAATTTCTTGATAAAATAGGTTTAACTGA 65932 Query 35386 TAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGA 35445 |||| ||| || ||||| ||||| |||| || | ||||||||||||||||| ||| | Sbjct 65933 AAGAGAAGAAGGTGATTTAGGACCAATATATGGTTGGCAATGGCGTCATTTTGGAGCTAA 65992 Query 35446 ATATGATA-CCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATAC 35504 |||| ||| ||| | |||||||| ||| | || | ||||| | || | Sbjct 65993 ATAT-ATAGATTGTCACACAGATTATACAGGACAAGGAAAAGATCAGCTTCGTGATGTTA 66051 Query 35505 TAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCC 35562 | | | | | | || ||| ||||||||| || |||||| | ||||||||||| Sbjct 66052 TTGATAAAATTATTAATAAGCCAACTGATAGAAGAATTATTATGTCTGCATGGAATCC 66109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989560936817145