Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq1265 93.3 4e-14 seq585 89.7 4e-13 seq1232 86.0 5e-12 seq1454 82.4 6e-11 >seq1265 Length=1280584 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| || ||||||||||| ||||| | | ||| | | || || | ||||| || Sbjct 261151 GTAGATTCTTTTTGAATATTATAATCTGAAAGAGTTCTACCATCTTCTAATTGTTTTCCT 261210 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| ||||||| | || ||||| || | || ||||| || |||||| ||| Sbjct 261211 GCAAAAATAAGACGTTGTTGATCTGGTGGGATACCTTCTTTATCTTGAATTTTAGCTTTG 261270 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | |||||| || || ||| | || ||||| ||||| |||||||| Sbjct 261271 ACATTTTCAATAGTATCAGAAGATTCAACTTCTAAAGTGATGGTCTTACCAGTTAAAGTC 261330 Query 19025 TTGACAAAAATTTGCATTTTAAAT 19048 ||||||||||||||||||||| || Sbjct 261331 TTGACAAAAATTTGCATTTTATAT 261354 Score = 93.3 bits (102), Expect = 4e-14 Identities = 172/250 (69%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 18793 AATTATAATATTTTATTGTTT-TCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACT 18851 ||||||| ||||||||| | |||||| || | | ||| || | ||| | ||||| | Sbjct 264453 AATTATA-TATTTTATTTAATATCCTCCACGTAGACGTAAAACTAAGTGAAGAGTAGATT 264511 Query 18852 CCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAA 18911 | ||||||||||| ||||| | | ||| | | || || | ||||| || ||| ||| Sbjct 264512 CTTTTTGAATATTATAATCTGAAAGAGTTCTACCATCTTCTAATTGTTTTCCTGCAAAAA 264571 Query 18912 TAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGC 18971 |||| | || ||||| || | || ||||| || ||| || || || | Sbjct 264572 TAAGACGTTGTTGATCTGGTGGGATACCTTCTTTATCTTGAATCTTGGCCTTGACATTTT 264631 Query 18972 CGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAA 19031 | | ||||| || || ||| | ||||||||| || || |||||||| ||||||| Sbjct 264632 CAATGGTATCAGAAGATTCAACTTCAAGGGTAATGGTCTTTCCAGTTAAAGTCTTGACAA 264691 Query 19032 AAATTTGCAT 19041 |||||||||| Sbjct 264692 AAATTTGCAT 264701 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || || ||||||||||| ||||| | | ||| | | || || | ||||| || Sbjct 257513 GTGGATTCTTTTTGAATATTATAATCTGAAAGAGTTCTACCATCTTCTAATTGTTTTCCT 257572 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| ||||||| | || ||||| || | || ||||| || |||||| ||| Sbjct 257573 GCAAAAATAAGACGTTGTTGATCTGGTGGGATACCTTCTTTATCTTGAATTTTAGCTTTG 257632 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | ||||| || || ||| | || ||||| ||||| |||||||| Sbjct 257633 ACATTTTCAATGGTATCAGAAGATTCAACTTCTAAAGTGATGGTCTTACCAGTTAAAGTC 257692 Query 19025 TTGACAAAAATTTGCATTTTAAAT 19048 ||||||||||||||||||||| || Sbjct 257693 TTGACAAAAATTTGCATTTTATAT 257716 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| || ||||||||||||||||| | | ||| | | || || | |||||||| Sbjct 265645 GTAGATTCTTTTTGAATATTGTAATCAGAAAGAGTTCTACCATCTTCTAATTGTTTACCT 265704 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| ||||||| | || || || || | || ||||| || ||| || ||| Sbjct 265705 GCAAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCTTTATCTTGAATCTTAGCTTTG 265764 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | |||||| || || ||| | || || || || || ||||||||| Sbjct 265765 ACATTTTCAATAGTATCAGAAGATTCAACTTCTAAAGTGATAGTCTTTCCAGTTAAAGTT 265824 Query 19025 TTGACAAAAATTTGCATTTTA 19045 || |||||||||||||||||| Sbjct 265825 TTAACAAAAATTTGCATTTTA 265845 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18812 TTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCC 18871 |||||||| || | | ||| || | || | ||||| || ||||||||||| ||||| Sbjct 257024 TTTCCTCCACGAAGACGTAATACTAAATGAAGAGTAGATTCTTTTTGAATATTATAATCT 257083 Query 18872 GCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACG 18931 | | ||| | | || || | ||||| || ||| ||||||| | || || || Sbjct 257084 GAAAGAGTTCTTCCATCTTCTAATTGTTTTCCTGCAAAAATAAGACGTTGTTGGTCTGGT 257143 Query 18932 GGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCC 18991 || | || ||||| || ||| || ||| || | | | |||||| || || Sbjct 257144 GGGATACCTTCTTTATCCTGAATCTTAGCTTTGACATTTTCAATAGTATCAGAAGATTCA 257203 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | || ||||| ||||| |||||||| ||||||||||||||||| Sbjct 257204 ACTTCTAAAGTGATGGTCTTACCAGTTAAAGTCTTGACAAAAATTTGCAT 257253 >seq585 Length=8358 Score = 89.7 bits (98), Expect = 4e-13 Identities = 179/263 (68%), Gaps = 7/263 (3%) Strand=Plus/Minus Query 18779 TAAAACTCGTTTTGAATTATAATATTTTATTGTTTTCCTCCTCGCAACCTTAACACCATG 18838 ||||| | |||| |||||| ||||| ||| ||| || || | | ||| || | | Sbjct 5298 TAAAATTATTTTT--ATTATA-TATTTAATT----TCCACCACGAAGACGTAAGACTAAG 5246 Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 || | || || || ||||||||||||||||| | | ||| | | || || | ||| Sbjct 5245 TGAAGAGTGGATTCTTTTTGAATATTGTAATCAGAAAGAGTTCTTCCATCTTCTAATTGT 5186 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 ||||| ||| ||||||| | || || || || | || ||||| || |||||| Sbjct 5185 TTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCTTTATCTTGAATTTTA 5126 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 ||| || | | | |||||| | || ||| | |||||||| ||||| ||| Sbjct 5125 GCTTTAACATTTTCAATAGTATCAGAGGATTCAACTTCAAGAGTAATGGTCTTACCAGTT 5066 Query 19019 AAAGTTTTGACAAAAATTTGCAT 19041 |||||||| ||||| |||||||| Sbjct 5065 AAAGTTTTAACAAAGATTTGCAT 5043 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18829 TAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTC 18888 ||| || | ||| | ||||| || ||||||||||||||||| | | ||| | | || Sbjct 4799 TAAAACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAATCAGAAAGAGTTCTTCCATC 4740 Query 18889 CTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 || | |||||||| ||| ||||||| | || || || || | || ||||| || Sbjct 4739 TTCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCTTTATC 4680 Query 18949 GGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGT 19008 |||||| ||| || | | | |||||| | || ||| | |||||||| Sbjct 4679 TTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAGGATTCAACTTCAAGAGTAATGGT 4620 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| ||||||||||| ||||| |||||||| Sbjct 4619 CTTACCAGTTAAAGTTTTAACAAAGATTTGCAT 4587 >seq1232 Length=735369 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 18829 TAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTC 18888 ||| || | ||| | ||||| |||||||||||||| ||||| | | ||| | | || Sbjct 61678 TAAGACTAAGTGGAGAGTAGATTCCTTTTGAATATTATAATCAGAAAGAGTTCTACCATC 61619 Query 18889 CTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 || | || ||||| ||| ||||||| | || || || || | || || || || Sbjct 61618 TTCTAATTGCTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTTATC 61559 Query 18949 GGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGT 19008 |||||| ||| || | | | |||||| || || ||| | |||||||| Sbjct 61558 TTGAATTTTAGCTTTGACATTTTCAATAGTATCAGAAGATTCAACTTCAAGAGTAATGGT 61499 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAAT 19048 |||||| |||||||| || || || ||||||||||| ||| Sbjct 61498 TTTACCAGTTAAAGTCTTTACGAAGATTTGCATTTTGAAT 61459 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18829 TAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTC 18888 ||| || | ||| | ||||| |||||||||||||||||||| | | ||| | | || Sbjct 63046 TAAGACTAAGTGGAGAGTAGATTCCTTTTGAATATTGTAATCAGAAAGAGTTCTACCATC 62987 Query 18889 CTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 || | |||||||| ||| | ||||| | || || || || | || || || || Sbjct 62986 TTCTAATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTTATC 62927 Query 18949 GGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGT 19008 |||||| ||| || | | | |||||| || || ||| | |||||||| Sbjct 62926 TTGAATTTTAGCTTTGACATTTTCAATAGTATCAGAAGATTCAACTTCAAGAGTAATGGT 62867 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||||| |||||||| || || || |||||||| Sbjct 62866 TTTACCAGTTAAAGTCTTAACGAAGATTTGCAT 62834 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18829 TAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTC 18888 ||| || | ||| | ||||| ||||||||||| |||||||| | | ||| | | || Sbjct 63274 TAAGACTAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAATCAGAAAGAGTTCTACCATC 63215 Query 18889 CTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 || | |||||||| ||| ||||||| | || || || || | || || || || Sbjct 63214 TTCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTTATC 63155 Query 18949 GGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGT 19008 |||||| ||| || | | | |||||| || || ||| | |||||||| Sbjct 63154 TTGAATTTTAGCTTTGACATTTTCAATAGTATCAGAAGATTCAACTTCAAGAGTAATGGT 63095 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||||| |||||||| || || || |||||||| Sbjct 63094 TTTACCAGTTAAAGTCTTAACGAAGATTTGCAT 63062 >seq1454 Length=643854 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18829 TAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTC 18888 ||| || | ||| | ||||| |||||||||||||||||||| | | || | || Sbjct 190642 TAATACTAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCAGAAAGAGTACGACCATC 190701 Query 18889 CTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 || | || ||||| ||| ||||||| | || ||||| || | || || || || Sbjct 190702 TTCTAATTGCTTACCTGCAAAAATAAGACGTTGTTGATCTGGTGGAATACCTTCCTTATC 190761 Query 18949 GGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGT 19008 |||||| || || | | | |||||| || || ||| | |||||| || Sbjct 190762 TTGAATTTTAGCCTTAACATTTTCAATAGTATCAGAAGATTCAACTTCAAGGGTAATAGT 190821 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| ||||||||||| |||||||||||||| Sbjct 190822 CTTACCAGTTAAAGTTTTAACAAAAATTTGCAT 190854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414563609309686