Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1521 98.7 6e-16 seq585 91.5 9e-14 seq952 89.7 3e-13 seq1265 84.2 1e-11 seq502 84.2 1e-11 >seq1521 Length=627264 Score = 98.7 bits (108), Expect = 6e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||| || | ||| || | || | ||| || || || || ||||| || |||||||||| Sbjct 324352 CACCACCACGTAAACGAAGAACAAGATGTAAAGTAGATTCCTTTTGAATGTTGTAATCAG 324293 Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 | | | | | || || |||||||| || ||| || | |||||| ||||| | | Sbjct 324292 AAAGAGTACGACCATCTTCTAATTGCTTACCGGCAAAGATAAGACGTTGTTGGTCTGGTG 324233 Query 33261 GTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAA 33320 | || ||||| || || ||| ||| || ||| ||| |||||| || || || Sbjct 324232 GAATACCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCAATAGTGTCGGAGGATTCAA 324173 Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | || || || ||||| || |||||||| ||||| || || |||||||| Sbjct 324172 CCTCAAGGGTAATCGTCTTACCCGTAAGGGTTTTGACAAAGATTTGCAT 324124 >seq585 Length=8358 Score = 91.5 bits (100), Expect = 9e-14 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 || || || || || | || || |||||||| |||||||||||||| | | | | Sbjct 4573 CGTAAAACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAATCAGAAAGAGTTCTTCCA 4514 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || ||||| || ||| ||| || | |||||| ||||| | || || |||||||| Sbjct 4513 TCTTCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCTTTA 4454 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| ||| || ||| ||| || || || || ||| || ||||| || Sbjct 4453 TCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAGGATTCAACTTCAAGAGTAATA 4394 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || | ||| || ||||| |||||||| Sbjct 4393 GTTTTACCAGTTAAAGTCTTAACGAAGATTTGCAT 4359 Score = 91.5 bits (100), Expect = 9e-14 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 || || || || || | || || |||||||| |||||||||||||| | | | | Sbjct 5029 CGTAAAACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAATCAGAAAGAGTTCTTCCA 4970 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || ||||| || ||| ||| || | |||||| ||||| | || || |||||||| Sbjct 4969 TCTTCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCTTTA 4910 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| ||| || ||| ||| || || || || ||| || ||||| || Sbjct 4909 TCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAGGATTCAACTTCAAGAGTAATA 4850 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || | ||| || ||||| |||||||| Sbjct 4849 GTTTTACCAGTTAAAGTCTTAACGAAGATTTGCAT 4815 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 || || || || || | || || |||||||| |||||||||||||| | | | | Sbjct 4801 CGTAAAACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAATCAGAAAGAGTTCTTCCA 4742 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || ||||| || ||| ||| || | |||||| ||||| | || || |||||||| Sbjct 4741 TCTTCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCTTTA 4682 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| ||| || ||| ||| || || || || ||| || ||||| || Sbjct 4681 TCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAGGATTCAACTTCAAGAGTAATG 4622 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || | |||||| || || |||||||| Sbjct 4621 GTCTTACCAGTTAAAGTTTTAACAAAGATTTGCAT 4587 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 || || || || || | || || |||||||| |||||||||||||| | | | | Sbjct 5257 CGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAATCAGAAAGAGTTCTTCCA 5198 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || ||||| || ||| ||| || | |||||| ||||| | || || |||||||| Sbjct 5197 TCTTCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCTTTA 5138 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| ||| || ||| ||| || || || || ||| || ||||| || Sbjct 5137 TCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAGGATTCAACTTCAAGAGTAATG 5078 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || | |||||| || || |||||||| Sbjct 5077 GTCTTACCAGTTAAAGTTTTAACAAAGATTTGCAT 5043 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 || || || || || | || || |||||||| |||||||||||||| | | | | Sbjct 4345 CGTAAAACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAATCAGAAAGAGTTCTTCCA 4286 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273 || || ||||| || ||| ||| || | |||||| ||||| | || || |||||||| Sbjct 4285 TCTTCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCTTTA 4226 Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | || ||| || ||| ||| ||||| | || ||| || ||||| Sbjct 4225 TCTTGGATTTTAGC---TTTGACATTTTCAATTGTGTCAGAAGATTCAACTTCAAGAGTA 4169 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || | |||||| || || |||||||| Sbjct 4168 ATGGTCTTACCAGTTAAAGTTTTAACAAAGATTTGCAT 4131 >seq952 Length=293713 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||| || | ||| || | || | ||| || || || || ||||| || |||||||| | Sbjct 167337 CACCACCACGTAAACGAAGAACAAGATGTAAAGTAGATTCCTTTTGAATGTTGTAATCGG 167278 Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 | | | | | || || |||||||| || || || | |||||| ||||| | | Sbjct 167277 AAAGAGTACGACCATCTTCTAATTGCTTACCGGCGAAGATAAGACGTTGTTGGTCTGGTG 167218 Query 33261 GTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAA 33320 | || ||||| || || |||| ||| || ||| ||| |||||| || || | Sbjct 167217 GGATACCTTCCTTATCTTGAATCTTAGCTTTGACATTTTCAATAGTGTCGGAGGATTCGA 167158 Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | || || || || || || |||||||| ||||| || ||||||||||| Sbjct 167157 CCTCAAGGGTAATAGTCTTACCCGTAAGGGTTTTGACAAAAATTTGCAT 167109 >seq1265 Length=1280584 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 || || || ||||| | || || |||||||| |||||||||||||| | | | | Sbjct 264943 CGTAAAACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAATCAGAAAGAGTTCTTCCA 265002 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || ||||| ||||| ||| || | |||||| || || | || || |||||||| Sbjct 265003 TCTTCTAATTGTTTTCCTGCAAAAATAAGACGTTGTTGATCTGGTGGAATACCTTCTTTA 265062 Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || |||| ||| || || ||| ||| || || | || ||| || || || Sbjct 265063 TCTTGAATCTTGGCC---TTGACATTTTCAATGGTATCAGAAGATTCAACTTCAAGGGTA 265119 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| || | ||| || || ||||||||||| Sbjct 265120 ATGGTCTTTCCAGTTAAAGTCTTGACAAAAATTTGCAT 265157 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/207 (70%), Gaps = 9/207 (4%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG----TCATCCAATTGCTT 33228 || || |||||||| |||||||||||||| | ||||| || || ||||| || Sbjct 265645 GTAGATTCTTTTTGAATATTGTAATCAGAAA----GAGTTCTACCATCTTCTAATTGTTT 265700 Query 33229 TCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTG 33288 || ||| || | |||||| ||||| | || || |||||||| || |||| Sbjct 265701 ACCTGCAAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCTTTATCTTGAATCTTAGC 265760 Query 33289 TTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAG 33348 ||| || ||| ||| || || | || ||| || | ||| || || ||||| || | Sbjct 265761 TTTGACATTTTCAATAGTATCAGAAGATTCAACTTCTAAAGTGATAGTCTTTCCAGTTAA 265820 Query 33349 AGTTTTTACGAAAATTTGCATGTTTAT 33375 |||||| || ||||||||||| ||||| Sbjct 265821 AGTTTTAACAAAAATTTGCAT-TTTAT 265846 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 || || || ||||| | ||| || |||||||| ||||| |||||||| | | | | Sbjct 265399 CGTAAAACTAAATGAAGTGTGGATTCTTTTTGAATATTATAATCAGAAAGAGTACGACCA 265458 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || ||||| || || ||| || | |||||| ||||| | || || |||||||| Sbjct 265459 TCTTCTAATTGTTTACCTGCAAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCTTTA 265518 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| ||| || ||| ||| || || || | ||| || | ||| || Sbjct 265519 TCTTGAATTTTAGCTTTGACATTTTCAATGGTATCAGAGGACTCAACTTCTAAAGTGATG 265578 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || | ||| || || ||||||||||| Sbjct 265579 GTTTTACCAGTCAAAGTCTTGACAAAAATTTGCAT 265613 >seq502 Length=415512 Score = 84.2 bits (92), Expect = 1e-11 Identities = 137/195 (70%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 33182 TTTTGTATATTGTAATCAGACAAATTGAGTTG-GTCATCC---AATTGCTTTCCACTAAA 33237 ||||| || ||||||||||| | ||||| |||||| ||||| || || || Sbjct 365525 TTTTGAATGTTGTAATCAGAAA----GAGTTCTGTCATCTTCTAATTGTTTACCGGCGAA 365470 Query 33238 TATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGT 33297 ||||||||||| ||||| | || || ||||| ||||| |||| | || || | Sbjct 365469 AATTAAACGTTGTTGGTCAGGTGGAATACCTTCCTTTTCTTGAATCTTGTTCTTAACATT 365410 Query 33298 TTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTAC 33357 ||| ||||| | | ||| || || ||||| || ||||| ||||| ||||| || Sbjct 365409 GACAATACTGTCGGAAGACTCAACCTCAAGGGTTATAGTCTTTCCAGTAAGGGTTTTGAC 365350 Query 33358 GAAAATTTGCATGTT 33372 |||||||||||| || Sbjct 365349 GAAAATTTGCATCTT 365335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318770532999462